Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0928
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 228 VQAEGKYAIDSPGSPTAPEIPPE 296
           V  E  + +     PTAP IPPE
Sbjct: 90  VADENGFQVQGSHIPTAPPIPPE 112


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 590 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 679
           RY+       CG D F +    +S+  C G
Sbjct: 192 RYVPEGNMTACGTDYFNRGLLSASYLVCYG 221


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 590 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 679
           RY+       CG D F +    +S+  C G
Sbjct: 68  RYVPEGNMTACGTDYFNRGLLSASYLVCYG 97


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -1

Query: 293 RGNLWCSWTA-------------WRINSIFPFSLYILNFFNPFFAPYC 189
           RG+LW SW               W +N+     L   +FF  FF  YC
Sbjct: 384 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 431


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -3

Query: 174 KRTLFPLFWEAQEYEVILGVVKTFRNENTY 85
           KR      W  +EY++    +  F+N N +
Sbjct: 143 KREFMQKIWPFKEYQMNGNNITNFKNSNIF 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,946
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)