Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0927
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0537 + 3860277-3860286,3860464-3860576,3861729-3861799,386... 147 9e-36
06_01_0527 + 3822051-3822318,3822408-3822520,3823673-3823743,382... 147 9e-36
10_07_0109 + 12952293-12952952,12953049-12953402,12953494-129538... 109 2e-24
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243... 105 5e-23
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349... 102 3e-22
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 97 9e-21
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 95 4e-20
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 84 1e-16
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 35 0.056
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802... 33 0.30
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 29 2.8
08_02_1591 - 28076320-28076931 28 8.5
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 28 8.5
04_04_0264 + 24035282-24035686,24036877-24037118,24037230-240377... 28 8.5
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 8.5
>06_01_0537 +
3860277-3860286,3860464-3860576,3861729-3861799,
3861887-3861978,3862080-3862167,3862264-3862375,
3862503-3862599,3862710-3862791,3863153-3863273,
3863459-3863566,3863717-3863819,3863996-3864171
Length = 390
Score = 147 bits (356), Expect = 9e-36
Identities = 76/196 (38%), Positives = 115/196 (58%)
Frame = +2
Query: 125 QKPGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEE 304
++P ATI + + S + TP+ + TFKQP+ ++ ++Y RSGNPTR+ L+
Sbjct: 8 KEPSVATILTSFENSFDGFGSMS--TPLYQTATFKQPSATDNGPYDYTRSGNPTRDVLQS 65
Query: 305 CLAALDGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARLGINTT 484
+A L+ F S G IV+ +D+YGG++RLL QV R GI
Sbjct: 66 LMAKLEKADQAFCFTSGMAALAAVTHLLKSGQEIVAGEDIYGGSDRLLSQVAPRHGIVVK 125
Query: 485 FTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTP 664
D T I +V +A+ TK++W+E+PTNP L++ DI+ I +IA G +V+VDN+ ++P
Sbjct: 126 RIDTTKISEVTSAIGPLTKLVWLESPTNPRLQITDIKKIAEIAHYHG-ALVLVDNSIMSP 184
Query: 665 YLQRPLDFGADIVMYS 712
L RPL+ GADIVM+S
Sbjct: 185 VLSRPLELGADIVMHS 200
>06_01_0527 +
3822051-3822318,3822408-3822520,3823673-3823743,
3823831-3823922,3824024-3824111,3824208-3824319,
3824447-3824543,3824654-3824735,3825097-3825217,
3825403-3825510,3825661-3825763,3825940-3826115
Length = 476
Score = 147 bits (356), Expect = 9e-36
Identities = 76/196 (38%), Positives = 115/196 (58%)
Frame = +2
Query: 125 QKPGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEE 304
++P ATI + + S + TP+ + TFKQP+ ++ ++Y RSGNPTR+ L+
Sbjct: 94 KEPSVATILTSFENSFDGFGSMS--TPLYQTATFKQPSATDNGPYDYTRSGNPTRDVLQS 151
Query: 305 CLAALDGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARLGINTT 484
+A L+ F S G IV+ +D+YGG++RLL QV R GI
Sbjct: 152 LMAKLEKADQAFCFTSGMAALAAVTHLLKSGQEIVAGEDIYGGSDRLLSQVAPRHGIVVK 211
Query: 485 FTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTP 664
D T I +V +A+ TK++W+E+PTNP L++ DI+ I +IA G +V+VDN+ ++P
Sbjct: 212 RIDTTKISEVTSAIGPLTKLVWLESPTNPRLQITDIKKIAEIAHYHG-ALVLVDNSIMSP 270
Query: 665 YLQRPLDFGADIVMYS 712
L RPL+ GADIVM+S
Sbjct: 271 VLSRPLELGADIVMHS 286
>10_07_0109 +
12952293-12952952,12953049-12953402,12953494-12953816,
12953939-12954062
Length = 486
Score = 109 bits (262), Expect = 2e-24
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Frame = +2
Query: 71 DNKYVENKIGMADHGFLKQKPGFATIAIHAGQEPEKW--NSAAVVTPIVTSTT--FKQPA 238
D++YV+ + A ++ T+A+HAG++ + ++ TPIV+ TT F+ A
Sbjct: 74 DDRYVDGAVDDAPAAAAGRRASDETLAVHAGEKLGSGAAETDSIATPIVSGTTHWFRDSA 133
Query: 239 P------AEHTGFEYGRSGNPTRNTLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHG 397
FEYGR GNPT LEE ++AL+ + L T + G
Sbjct: 134 DLIAFREGRRRSFEYGRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPG 193
Query: 398 DHIVSSDDVYGGTNRLLRQVIARLGINTTFTDF-TNIEKVKNAMQEN-TKMIWIETPTNP 571
H+V++ D Y +R ++ +GI +TF D ++E ++ + E+ M + ++ TNP
Sbjct: 194 GHVVATADCYSEARAFIRDKLSNMGITSTFVDLDDDMEALECVLDESEVTMFYADSMTNP 253
Query: 572 LLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQRPLDFGADIVMYS 712
LKVVD+ + ++ RG +V +D+T +P Q+PL GAD+V++S
Sbjct: 254 HLKVVDVTRVAELCHRRG-ALVCIDSTLASPINQKPLALGADVVLHS 299
>10_07_0105 +
12922828-12923448,12923554-12923907,12924008-12924330,
12928324-12928401,12928760-12928883
Length = 499
Score = 105 bits (251), Expect = 5e-23
Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Frame = +2
Query: 143 TIAIHAGQEPEKWNSAA----VVTPIVTSTT--FKQPAP------AEHTGFEYGRSGNPT 286
T+A+HAG++ +AA + TPIV TT F+ A FEYGR GNPT
Sbjct: 83 TLAVHAGEKLGSGAAAAETDSIATPIVGGTTHWFRDSADLIAFREGRRRSFEYGRYGNPT 142
Query: 287 RNTLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIA 463
LEE ++AL+ + L T + G H+V++ D Y +R ++
Sbjct: 143 VKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVATADCYSEARAFIRDKLS 202
Query: 464 RLGINTTFTDF-TNIEKVKNAMQE-NTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIV 637
+GI +TF D ++E +++ + E M + ++ TNP LKVVD+ + ++ RG +V
Sbjct: 203 NMGITSTFVDLDDDMEALESVLDEGEVTMFYADSMTNPHLKVVDVTRVAELCHRRG-ALV 261
Query: 638 VVDNTFLTPYLQRPLDFGADIVMYS 712
+D+T +P Q+PL GAD+V++S
Sbjct: 262 CIDSTLASPINQKPLALGADVVLHS 286
>10_07_0106 -
12933918-12934041,12934164-12934486,12934584-12934937,
12935029-12935646
Length = 472
Score = 102 bits (244), Expect = 3e-22
Identities = 66/203 (32%), Positives = 110/203 (54%), Gaps = 13/203 (6%)
Frame = +2
Query: 143 TIAIHAGQEPEKW--NSAAVVTPIVTSTT--FKQPAP--AEHTG----FEYGRSGNPTRN 292
T+A+HAG++ + ++ TPIV+ TT F+ A A G FEYGR GNPT
Sbjct: 84 TLAVHAGEKLGSGAAETDSIATPIVSGTTHWFRDSADLIAFREGWRRSFEYGRYGNPTVK 143
Query: 293 TLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARL 469
LEE ++AL+ + L T + G H+V + D Y + ++++
Sbjct: 144 VLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVVTADCYSEARAFIHDKLSKM 203
Query: 470 GINTTFTDF-TNIEKVKNAMQEN-TKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVV 643
GI +TF D ++E +++ + E+ M + ++ TNP LKVVD+ + ++ RG +V +
Sbjct: 204 GITSTFVDLDDDMEALESVLDEDEVTMFYADSMTNPHLKVVDVARVAELCHRRG-ALVCI 262
Query: 644 DNTFLTPYLQRPLDFGADIVMYS 712
D+T +P Q+PL GAD+V++S
Sbjct: 263 DSTLASPINQKPLALGADVVLHS 285
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 97.5 bits (232), Expect = 9e-21
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Frame = +2
Query: 257 FEYGRSGNPTRNTLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDDVYGG 433
FEY R GNPT LE+ ++A++ + + T + G H+V++ D Y
Sbjct: 77 FEYARYGNPTVEVLEDKISAMEKAEATIVTSSGMNAIVATLLAVVPPGGHVVATTDCYSE 136
Query: 434 TNRLLRQVIARLGINTTFTDFTNIEKVKNAM-QENTKMIWIETPTNPLLKVVDIEAIVKI 610
+R ++++GI TTF D ++E +++ + Q N M + ++ TNP LK VD+ + ++
Sbjct: 137 ARAFIRDRLSKMGIRTTFVDLDDMEALQSVLDQGNVTMFYADSLTNPHLKCVDVRRVAEL 196
Query: 611 ARSRGDIIVVVDNTFLTPYLQRPLDFGADIVMYS 712
RG +V +D+T +P Q+PL GAD+V++S
Sbjct: 197 CHQRG-ALVCIDSTLASPINQKPLTLGADVVLHS 229
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 95.5 bits (227), Expect = 4e-20
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 248 HTGFEYGRSGNPTRNTLEECLAALDGGKYGLTFASXXXXXXXXXXXX-NHGDHIVSSDDV 424
H FEYGR GNPT LE+ ++AL+ + + AS G H+V++ D
Sbjct: 161 HASFEYGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVAMLSALVPAGGHVVTTTDC 220
Query: 425 YGGTNRLLRQVIARLGINTTFTDFTNIEKVKNAMQENT-KMIWIETPTNPLLKVVDIEAI 601
Y T + + + GI T +++ ++NA+ N + + ETPTNP L+ +DI+ +
Sbjct: 221 YRKTRIYMETELPKRGITMTVIRPADMDALQNALDNNNVSLFFTETPTNPFLRCIDIDLV 280
Query: 602 VKIARSRGDIIVVVDNTFLTPYLQRPLDFGADIVMYS 712
K+ S+G ++ +D+TF +P Q+ L GAD+V++S
Sbjct: 281 SKMCHSKG-ALLCIDSTFASPINQKALTLGADLVIHS 316
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 83.8 bits (198), Expect = 1e-16
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Frame = +2
Query: 263 YGRSGNPTRNTLEECLAALDGGKYGLTFASXXXXXXXXXXXX-NHGDHIVSSDDVYGGTN 439
Y R NPT L +AAL+G + AS G H+V+S +YGGT+
Sbjct: 99 YSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTH 158
Query: 440 RLLRQVIARL-GINTTFTDFTNIEKVKNAMQEN-TKMIWIETPTNPLLKVVDIEAIVKIA 613
LL + + R G+ TF D + V+ A++ T+++++ET +NP L V DI + ++A
Sbjct: 159 ALLSRFLPRASGVRATFVDADDEAAVRAAVRPGETRVVYVETMSNPTLAVADIPMLARVA 218
Query: 614 RSRGDIIVVVDNTFLTPYLQRPLDFGADIVMYSL 715
G +VVDNTF TP + P GAD+V++S+
Sbjct: 219 HDAG-AKLVVDNTF-TPMVVSPARLGADVVVHSV 250
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 35.1 bits (77), Expect = 0.056
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +2
Query: 389 NHGDHIVSSDDVYGGTNRLLRQVIARL-GINTTFTDFT-NIEKVKNAMQENTKMIWIETP 562
N GD ++ Y L A + I DF+ +E++K A+ +NT+ I I TP
Sbjct: 178 NPGDEVILFAPFYDSYEATLSMAGANVKAITLRPPDFSVPLEELKAAVSKNTRAIMINTP 237
Query: 563 TNPLLKVVDIEAIVKIAR--SRGDIIVVVDNTF 655
NP K+ E + IA D+++ D +
Sbjct: 238 HNPTGKMFTREELEFIATLCKENDVLLFADEVY 270
>06_02_0276 +
13678457-13678734,13679592-13679931,13680025-13680243,
13680328-13680420
Length = 309
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 500 NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIA--RSRGDIIVVVDNTF 655
N+E V+ ENT I I P NP V E + KIA S+ ++V+ D +
Sbjct: 171 NVEAVEALADENTVAIVITNPNNPCGNVYTYEHLSKIADTASKFGLLVIADEVY 224
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -2
Query: 363 APRPEANVRPYFPPSNAAKHSSRVFLVGFPERP-YSKPVCSAGAGCLNVVDVTMGVTTAA 187
AP P+ P+ P KH R F YSK +C G + + +TTAA
Sbjct: 24 APSPQTPTVPHISPLVLEKHKCRTLSASFLSLSLYSKMLCHRGLSAVASGRLRRALTTAA 83
>08_02_1591 - 28076320-28076931
Length = 203
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 128 KPGFATIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPA 244
KP +T+++ + P +AA P +T K+PAPA
Sbjct: 22 KPRSSTLSMPTSRAPTSLRAAAEDQPAAAATEEKKPAPA 60
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -2
Query: 615 LAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFFTFSIFVKSVNVV 478
L IF + S S F F+ +++QI+L F +FF+ VKS +V+
Sbjct: 430 LDIFRLNSYSIQFVFYFLYINLQIVLAFLLASFFS---SVKSASVI 472
>04_04_0264 +
24035282-24035686,24036877-24037118,24037230-24037750,
24038262-24038746
Length = 550
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 524 MQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTP 664
M+E+ + + P L ++D+ V A +R +I+V++DN TP
Sbjct: 111 MRESVAGVRVNNPGLLDLPLIDVFQEVVSALARNNIMVILDNQMTTP 157
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Frame = +1
Query: 211 HIHYIQTASTGRTYGF*IRSLWKSY*KHPRRMLSCIRRRKIRSNVRFW--------PRSD 366
H+HY++ G TY RSL K + R+ S I R + ++ W PR
Sbjct: 304 HVHYVKVLEKGDTYEIIERSLPKK--QIIRKDPSEIAREESEKTIKLWHAIAVKGIPRHH 361
Query: 367 HNFGCSAKSRR--SHRVLR*CIRRYKQTIKAS 456
NF K R+ + R C R K + S
Sbjct: 362 RNFMALLKKRQVDAKRFSENCQREVKFKVSRS 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,716
Number of Sequences: 37544
Number of extensions: 421250
Number of successful extensions: 1279
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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