Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0926
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0332 + 2621058-2621348,2621505-2622263                           29   4.4  
11_01_0632 - 5069425-5069441,5070656-5070809,5070889-5071050,507...    28   5.9  
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653...    28   7.7  
02_05_0617 + 30383334-30383579,30383592-30383681,30383772-303839...    28   7.7  
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194...    28   7.7  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    28   7.7  

>03_01_0332 + 2621058-2621348,2621505-2622263
          Length = 349

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 566 IHQLLFYKQTPENYPPSG*GKVSKPAT 486
           +HQ LF   TP   PP+G G  S P T
Sbjct: 30  MHQPLFNPTTPTTQPPNGNGSQSVPQT 56


>11_01_0632 -
           5069425-5069441,5070656-5070809,5070889-5071050,
           5071270-5072199
          Length = 420

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 458 VDLTTDSNTRSPALRPYPSLREGSSLVSVYRTRADECG 571
           V L  DSN+++P L   PSL E +  V V    +D CG
Sbjct: 231 VSLQLDSNSKTPLLESMPSLAEAT--VRVTAGCSDVCG 266


>07_03_1284 +
           25463476-25463557,25465088-25465220,25465307-25465378,
           25465476-25465544,25465629-25465700,25465792-25465860,
           25466155-25466220,25466299-25466364,25466452-25466786,
           25466931-25467214,25467796-25468067,25468152-25468287,
           25468625-25468755,25468890-25469046,25469185-25469327,
           25470105-25470190,25471530-25472962,25474563-25474712,
           25475221-25475322,25475467-25475568
          Length = 1319

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 437 IPSTLNYVDLTTDSNTRSPALRPYPSLREGSSLVSVYRTRADECGRLWM 583
           + +TL+ V   TDS+  +     Y S+   S L +      D CG+ W+
Sbjct: 12  LAATLSGVSANTDSDDVNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWL 60


>02_05_0617 +
           30383334-30383579,30383592-30383681,30383772-30383901,
           30384578-30384591
          Length = 159

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 662 YSNRRPRSPVAVLAGDCQVSPVFQYPPSRVCRIHQLLFYKQTPENYPPS 516
           Y  RRP +P A   G   ++  +  PP    R H+ L     P  +PPS
Sbjct: 29  YRPRRPAAPTAP-PGSRGLAAQWLLPPPPPRRSHRRLIAPAVPAEFPPS 76


>02_03_0236 +
           16717320-16717496,16718082-16718240,16719410-16719472,
           16720041-16720205,16721140-16721217,16721318-16721428,
           16721516-16721632,16721713-16721808,16722592-16722662,
           16722780-16723011
          Length = 422

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 278 PSWNLFRPEIVRPFVKPVENETGRFFVQYN-NVPMGVEKVGDRLFITVPRRRYGI-PSTL 451
           PSW+ + P  V PFV  +++   RF + +  + P+   +  D+L   +P RR+ + P  L
Sbjct: 342 PSWSWYYPFYVAPFVSDLKSNC-RFEISFTVDKPL---RPFDQLMAVLPLRRHALSPFLL 397

Query: 452 NY 457
            Y
Sbjct: 398 LY 399


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 281 SWNLFRPEIVRPFVKPVENETGRFFVQYNNVPMGVEKVGD 400
           SW+   P++ RPF      +  R+ VQ++   +GV++V D
Sbjct: 562 SWDSLPPDLARPF---SIGQQDRYNVQFDRPDLGVDEVKD 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,050
Number of Sequences: 37544
Number of extensions: 358471
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)