Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0925
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   3.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   5.5  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 107 HTVCITNLYVITKLSPTLCTLFYYLKYIKMNYCSLVS 217
           HT CI       K S  LC   YY  +++M+  S V+
Sbjct: 228 HTQCIDTWMTTMKASCPLCNEDYYKYFLQMDAASSVT 264


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 TDSFCLFKVYFIQKLRSFTYRLRHYEVCQVS 468
           T + C+F ++F+   R+     RH   C +S
Sbjct: 338 TSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 391 LFKVYFIQKLRSFTYRLRHYEVCQVSKLLIKILRY 495
           LF++++++ L  F+Y + +Y    +SKL +  L +
Sbjct: 333 LFRIWWLKYLGPFSYLILYYFFLDISKLQMTSLTF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,085
Number of Sequences: 5004
Number of extensions: 40235
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)