Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0925
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 154 HTVYIILLS*IYKNELL 204
           H++++IL+  IY NE +
Sbjct: 11  HSIFLILIIFIYSNETI 27


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 154 HTVYIILLS*IYKNELL 204
           H++++IL+  IY NE +
Sbjct: 11  HSIFLILIIFIYSNETI 27


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 152 PTLCTLFYYLKYIKMNYCSLVSLKLENGWTDLASFTLELLVKV 280
           P    +F Y K  +       SLKL      +AS  LEL +++
Sbjct: 218 PLFVMVFTYYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRI 260


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 488 YVTDVFSRLGYPSADSHKELRSNK 559
           +V+D      Y   D HKEL   K
Sbjct: 473 FVSDAVMAFAYAFRDMHKELCDGK 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,435
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)