Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0924
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   0.97 
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   1.3  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   3.0  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.8  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   6.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 135  FNSIIHYYSVQYTEIILCNIYIFGNQACLYYIV 37
            F+++I   S++Y + + CN+   GN+   Y ++
Sbjct: 1509 FDNLIKESSIEYPDTLSCNVIFSGNERKAYKLI 1541


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +2

Query: 278 SNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXX----GVRSTRWPTNYWTRVLVPL 445
           SN   K    EL  P+T+T +Q                   G    + P+ Y     +PL
Sbjct: 17  SNTTSKSIFNELRCPVTLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTTLPL 76

Query: 446 AIAKLLTTLCSQVSIWKVPVSYAHT 520
           +I ++   +   ++  K+PVS  HT
Sbjct: 77  SIFQIGGHVFGSLATTKIPVSTVHT 101


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 132 NSIIHYYSVQYTEIILCNIYIFGNQACLYYI 40
           N I+ Y+    T I+   +Y+FG    L++I
Sbjct: 2   NKILFYFFFFLTLILSATVYLFGGPMMLFFI 32


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  QYNISKPDYQKCICYTK 89
           Q++I KPD   C C+T+
Sbjct: 224 QFDIVKPDSSSCCCFTR 240


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 295 TGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMA 411
           T + RAT S NY++ +A  S L   + AS   ++  ++A
Sbjct: 54  TLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLA 92


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 MLSSASNVVGKLALTELPFPL 325
           +L S  NV+ K AL +LP+PL
Sbjct: 19  VLLSQGNVLKKTALFQLPYPL 39


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 237 TISVSRLEPLVPIALFFYQKVL*SKVSITESLKIFNSIIHYYSVQYTEIILC 82
           +++V RL     I LF+Y   L   V I E+L     I+   S  +   +LC
Sbjct: 556 SVTVRRLATSTLIRLFYYYYDLRDAVPIQETLAKMLEILETPSFPFVSRMLC 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,797
Number of Sequences: 5004
Number of extensions: 42191
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)