Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0916
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    33   0.29 
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    29   3.5  
02_02_0657 - 12693609-12694340                                         28   8.1  

>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 371 P*TRHYGSSRSINGAFRYHKHRSPSSVSNTPG*SPVSSPTRQRGAEIASQGY 526
           P  R+ G+SRS  GA R H + +P   SN+   S        RG++ A+ GY
Sbjct: 27  PSDRYEGASRSHEGASRSHYYDTPVEASNSRMSSHTPGSHLLRGSDEAAPGY 78


>01_03_0260 -
           14323503-14323603,14323751-14323990,14324212-14324275,
           14324349-14324654,14324841-14325055,14325551-14325845,
           14325965-14326129,14326324-14327352,14333553-14333814,
           14334135-14334631,14338714-14340123
          Length = 1527

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 580 SQIYKLKIIFALFFLPML-IALRGYFSSSLTCR*AHGALTGSVANTGRRPVLVVP 419
           SQ   L  + +LF L +L  ALR   SSS + R   G   G   + G+RP+L  P
Sbjct: 48  SQRVLLSALASLFLLLLLCFALRRAVSSSSSSRRRRGGADGIDGDDGKRPLLHRP 102


>02_02_0657 - 12693609-12694340
          Length = 243

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 478 HGALTGSVANTGRRPVLVVPKST-VNGSGGSVM 383
           HG    S  N GRRP  VV K T V G GG+ +
Sbjct: 187 HGRGGASTENGGRRPWKVVGKGTAVPGDGGTAV 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,173
Number of Sequences: 37544
Number of extensions: 337822
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)