Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0914
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.50 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   6.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   6.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 608 FFFLYSFVLLTVLFCEWSFFL 670
           FFF +SF++L V++  WS FL
Sbjct: 365 FFFPFSFLILNVVY--WSTFL 383


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 657 HSQKSTVSKTKEYKKKNIYQVSRP 586
           H +++T  K K  +KK  +++ RP
Sbjct: 9   HKRRATGGKRKPIRKKRKFELGRP 32


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -2

Query: 277 HVEAAQGELHHHAQLAAEPLRRGEPFEMQDQHLRELLH 164
           H E  +   H  + L    L R    ++++ H+R  LH
Sbjct: 128 HCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTLH 165


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 68  LQHFVREEELDGDEKPTC 121
           L+HF  EE  D   + TC
Sbjct: 29  LEHFENEERADRHRRVTC 46


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 68  LQHFVREEELDGDEKPTC 121
           L+HF  EE  D   + TC
Sbjct: 29  LEHFENEERADRHRRVTC 46


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 68  LQHFVREEELDGDEKPTC 121
           L+HF  EE  D   + TC
Sbjct: 4   LEHFENEERADRHRRVTC 21


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 576 SSSVTRVTVNCHW 538
           SSSV     +CHW
Sbjct: 184 SSSVMEAAYSCHW 196


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +2

Query: 242 VVVEFPLSGLDMSP 283
           +++++P+SG D+ P
Sbjct: 634 ILLKYPISGFDLEP 647


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 256 ELHHHAQLAAEPLRRGEPFEMQDQHLRE 173
           +LHHH     +   + +P + Q Q  ++
Sbjct: 813 QLHHHQSTHPQAQAQAQPQQQQQQQQQQ 840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,154
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)