Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0913
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    27   1.9  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    27   3.4  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   7.8  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   7.8  

>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 336 ISLTQICCLFKRVLPIPWTIITVNCL 259
           IS+  I C FK +  +PWT     CL
Sbjct: 163 ISIVVIVCYFKHLPLLPWTFTVEACL 188


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 449 NGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVIAFH*HKYVVCSNVFYL 291
           +GCP      +   +A     + P  A  +EV+  V A H H  + C+ VF L
Sbjct: 384 HGCPYRTYSVNNLVSALASMGIAPDSAGCREVVEAVKARHYH--IACTRVFEL 434


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 323 KYVVCSNVFYLYLGQSLLSTVLIFSTVRREPLDSVKHWILTFLKRLP 183
           +Y+V  N+ Y  L     +T +  S V +  L ++   +LT+L  +P
Sbjct: 247 QYIVTGNLLYRVLELEDFATQMDASIVMKNELIALNEHMLTYLPSIP 293


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 443 SRCNYTETLELICQGVW 493
           S CN+   L  IC+GVW
Sbjct: 479 SVCNFVAFLHQICKGVW 495


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 562 GRAHSPPGVKWLLEPIDIYS 503
           G  H P  V WLL P DIYS
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 211 QCFTESNGSLL-TVLKIKTVDSNDCPRYR*NTFEQTTYLC**NAITGGRTSCESARVGTT 387
           +C T+S  ++  T+ K+KT+D   C     +T  + T  C    +  G   C    +G  
Sbjct: 98  ECITKSIKTVRETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDIRC----IGLC 153

Query: 388 APPISAVKQ 414
            P +  +K+
Sbjct: 154 EPSVEEIKR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,162
Number of Sequences: 5004
Number of extensions: 47403
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)