Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0910
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   5.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 439  VTSKEMHVHNCEKCA*CE-FLTFAIEEKLTQLCMELERLPT 320
            +  K+ +V  C     C  +L FA E  +   C+++ RLPT
Sbjct: 1034 IWKKKTYVCLCTTIGLCNIYLCFANENHIISRCLQITRLPT 1074


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 227 KHTLSTLNVTSLLQIC--FLNYFFSITSEALTTIVLLDTVI*RVLITVF 87
           K  L T  + + + +C  F +  F++ +EA+TT+  +   +  + +TVF
Sbjct: 132 KRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVF 180


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 203 VTSLLQIC--FLNYFFSITSEALTTIVLLDTVI*RVLITVF 87
           V S + +C  F +  FS+ +EA+TTI  +   +  + +TVF
Sbjct: 139 VYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVF 179


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 257 VNFYAIQNVKKHTLSTLNVTSLLQ 186
           +NFY I+N K    +TL +T L+Q
Sbjct: 880 LNFYLIENSKTIDEATLQLTDLIQ 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,454
Number of Sequences: 5004
Number of extensions: 53422
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)