Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0909
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.1  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   8.3  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   8.3  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 392 SKMQIRFLSFFRSICANVHKIIMDMIQSWNETIMNKPD 279
           S  + +F S  + + AN+ KI+ + +Q  NE++  K D
Sbjct: 785 SDQKSKFESKQQDLIANIGKIVSNFLQEQNESLYTKAD 822


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 140 FTLNICKHKFLKVLTKMCFFYYRKRSQW*FPSTKKTINIATRLARPNLVYSLLFHSMI-V 316
           F + ICKHKF      +C   +    Q+  P  ++ ++ A +  + N + S+  HS + +
Sbjct: 86  FIIGICKHKFHSSTVFLCLGTHIMEGQYIVP--EELLDYAKKRGK-NRIISIPNHSTVDI 142

Query: 317 SYP**FCEHLHI 352
            +   F +H+ +
Sbjct: 143 PFQVNFPKHVEV 154


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 181 NENVFFLLQKTVTMVIPVDEEDDKHRNTP 267
           NE VF    +    VIP DE+DD++++ P
Sbjct: 161 NEEVFDT--EITNPVIPADEDDDEYQDLP 187


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 609 ICQMIDLITYRAAPHITLESWYIVS*IHKNM*ISSTFIIK 490
           I  + +++  RA+P    + W + S + K +  S+T ++K
Sbjct: 330 ILTLAEIMEIRASPRDPFQGWIVESSVTKGVGSSATVVVK 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,125
Number of Sequences: 5004
Number of extensions: 59036
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)