Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0905
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    29   0.57 
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   1.7  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   3.0  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   3.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   9.3  

>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 373 QTDAILFDECYPDALLKYCHKIGEGVYGEVFLWRARDGRARVMKIVPIAGHTKVNGED-Q 549
           Q DA+ F +       +   KIGE  Y EV+     D    V K++P        GED Q
Sbjct: 142 QEDALPFSQFVKSQTFEI-QKIGEASYSEVYQASNADDVPVVWKVIPF-------GEDGQ 193

Query: 550 KDYHEIISEIVIA 588
             Y ++++E+ I+
Sbjct: 194 AQYADVLNEVQIS 206


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 433 KIGEGVYGEVF-LWRARDGRARVMKIVPIAGHTKVNG 540
           K+GEG +GEV+   R +DG+   +K   I  HT+  G
Sbjct: 41  KLGEGTFGEVYKSQRRKDGKVYALK--RILMHTEKEG 75


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 349 DYVLRRCNQTDAILFDECYPDAL--LKYCHKI 438
           DYVL+ C Q +  L DE   + L    YC++I
Sbjct: 224 DYVLKHCEQFEGFLLDEESGEVLPVSDYCNEI 255


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 376 TDAILFDECYPDALLKYCHKIGEGVYGEV 462
           T  + F+E Y +A +   HK GE +Y  V
Sbjct: 41  TSQLSFEELYRNAYILVLHKYGEKLYNHV 69


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 433 KIGEGVYGEVFLWRARDGRARV 498
           K+GEG Y  VFL R ++   RV
Sbjct: 16  KVGEGTYAVVFLGRQKETNRRV 37


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 570 DNLVIVLLVFSIDLGMTSNWNYFHYSSSAISSTPK 466
           D + + +L     L    +WN+F+Y++SAI S  K
Sbjct: 475 DGVSMTILTICKILLNNFDWNFFNYNNSAIDSYAK 509


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 436 IGEGVYGEVFLWRARD-GRARVMKIV 510
           IG+G +G+V+L R +D  R   MK++
Sbjct: 272 IGKGTFGQVYLVRKKDTERVYAMKVL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,931
Number of Sequences: 5004
Number of extensions: 54940
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)