Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0904
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 223 1e-59
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 105 7e-24
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 67 2e-12
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 57 2e-09
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 51 1e-07
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 44 2e-05
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 39 7e-04
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 34 0.019
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 33 0.033
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 32 0.075
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 6.5
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 223 bits (546), Expect = 1e-59
Identities = 101/173 (58%), Positives = 129/173 (74%)
Frame = +1
Query: 85 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 264
GF FE +QRN L +KGFP PKAT TGTTIVG+I D ++LGADTRAT +++DKNC+K
Sbjct: 9 GFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKK 68
Query: 265 IHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH 444
+H ++ N++C GAGTAADTE T ++S +EL L+T R V TA T+LK+ LFRYQGH
Sbjct: 69 LHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGH 128
Query: 445 IGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 603
IGA LVLGG D GPH++ I HGS DKLPY +GSGSLAA++V E ++ D+
Sbjct: 129 IGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDL 181
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 105 bits (251), Expect = 7e-24
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Frame = +1
Query: 157 KTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQ 336
+ GTTI + Y DGVIL AD+R T ++++ K+ L N++CC +G+AADT+
Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVAD 81
Query: 337 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGPHIYCIYPH 513
+ L + R+ G V TAATL M ++ + + A L++ G D +TG +Y I
Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLG 141
Query: 514 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEE 612
GS+ K P A GSGS +A ++ +M +E
Sbjct: 142 GSLHKQPLAIGGSGSAFIYGFCDANFRENMTQE 174
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 67.3 bits (157), Expect = 2e-12
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 3/183 (1%)
Frame = +1
Query: 73 IPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDK 252
+PVP S + RN K GTT + Y G+++ D+RA+ +++ +
Sbjct: 33 VPVPQSSL--YLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQ 90
Query: 253 NCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRML 426
+K+ + N Y G AG AAD + + + L +L + V A+ +L +
Sbjct: 91 TVKKV--IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNIT 148
Query: 427 FRYQGH-IGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 603
+ Y+G+ + +L G + G +Y I G+ K ++GSGS A V ++G++ D+
Sbjct: 149 YSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDL 208
Query: 604 NEE 612
+++
Sbjct: 209 SKQ 211
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 57.2 bits (132), Expect = 2e-09
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Frame = +1
Query: 142 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 321
A +A K G+T +G+ D V+LG + R T + ++ + +K+ + S++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKDAVVLGVEKRLT-SPLMESHSVEKLFEIDSHIGCAISGLTADA 85
Query: 322 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH----------IGAALVLG 468
+ Q + R +E+ + + R+ +G G AL++
Sbjct: 86 RTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIA 145
Query: 469 GVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEE 612
G+D GP +Y P G+ + +GSGS A + + +DM E
Sbjct: 146 GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLE 193
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 51.2 bits (117), Expect = 1e-07
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Frame = +1
Query: 175 VGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQL 354
+GI+ DG++L A+ + T + +++ +K++++ NM C AG AD + + A ++
Sbjct: 35 LGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILI-NYARRV 93
Query: 355 ELQRLHT-GRTVPVETAATL---LKRMLFRYQG--HIGAALVLGGVDR-TGPHIYCIYPH 513
Q L T +P E LK+ +Y G G + + G D G ++ P
Sbjct: 94 GQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPS 153
Query: 514 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 606
G+ ++G S + ++ +K D+N
Sbjct: 154 GNYGSWQANSIGGNSTSVQSLMRQEYKDDIN 184
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 44.0 bits (99), Expect = 2e-05
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 6/178 (3%)
Frame = +1
Query: 88 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 267
FS F N L Q + A A G T VGI DGV+L + + T + + +K+
Sbjct: 7 FSLTTFSPNGKLVQIEY-ALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIG-ASLEKV 64
Query: 268 HYLASNMYCCGAGTAADTEMTTQSV--ASQLELQRLHTG----RTVPVETAATLLKRMLF 429
+ ++ +G D + +Q ++++ + + E A+ + +
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 430 RYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 603
G +L++ G+D GP +Y + P G+ +G S AA E + ++
Sbjct: 125 GGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDEL 182
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 38.7 bits (86), Expect = 7e-04
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = +1
Query: 145 PKATKTGTTIVGIIYADG-VILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 321
P GTT+ I DG IL DTR+ ++ + ++H + ++ +G AD
Sbjct: 8 PYVQNGGTTVA--IAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 322 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGP-H 492
+ + +++L + R + ++ A +++ +L+ R+ + + G+D+ G
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYY-VYTTVAGIDKEGKGE 124
Query: 493 IYCIYPHGSVDK 528
IY P GS ++
Sbjct: 125 IYSFDPVGSYER 136
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 33.9 bits (74), Expect = 0.019
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Frame = +1
Query: 142 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 321
A KA + +T +GI DGVIL + T + N +I + ++ G D
Sbjct: 26 AYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDG 84
Query: 322 EMTTQSVASQLELQRLHTGRTVPVETAATLLKR--MLFRYQGHI---GAALVLGGVDRTG 486
+ + + R + G +P A L LF + G + D G
Sbjct: 85 QHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEG 144
Query: 487 PHIYCIYPHGSVDKLPYATMGSGSLAA 567
PH+Y + P+G A G G A
Sbjct: 145 PHLYMVEPNGVYWGYNGAAAGKGRQVA 171
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 33.1 bits (72), Expect = 0.033
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Frame = +1
Query: 142 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 321
A +A K G+ VG++ +L A R E K K+ + ++ AG A D
Sbjct: 25 ALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK---KLIRIDDHIGIAIAGLAPDA 81
Query: 322 EMTTQSVASQLELQRLHTGRTVPVETAAT-LLKRMLFRYQGH----IGAALVLGGVDRTG 486
+ + + + + R +PV + + ++ Q + G ++ G D +G
Sbjct: 82 RVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESG 141
Query: 487 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 582
PH+ P G V + +MGS S +A E
Sbjct: 142 PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 31.9 bits (69), Expect = 0.075
Identities = 16/73 (21%), Positives = 39/73 (53%)
Frame = +1
Query: 160 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 339
TG++++ + +ADGV++ AD A+ ++ + +++ + N G +D + Q
Sbjct: 42 TGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQ-IQR 100
Query: 340 VASQLELQRLHTG 378
+ +LE++ + G
Sbjct: 101 LLEKLEIKEGNYG 113
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 504 NAVNMRTGSVNTSQNQSSPYMALIAK*HSFQQCGSSF 394
N + M+ S+ T + + +PY L+A + CGS +
Sbjct: 861 NIIPMQKPSLTTHETKQNPYDLLVALDSDRKACGSLY 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,909
Number of Sequences: 5004
Number of extensions: 51159
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -