Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0903
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 62 4e-10
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 60 2e-09
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 60 2e-09
05_01_0043 - 295041-295173,296252-296537,296616-296697 60 2e-09
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 56 3e-08
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.27
09_06_0223 + 21659549-21659729,21659888-21659979 29 4.4
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 4.4
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 29 4.4
05_03_0591 + 15892772-15893412,15893478-15893910 28 5.9
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 7.7
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 3 GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
GVR AQQP+LFVGMILILIFAE LGLYGLIV I L
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALGLYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 24 QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = +3
Query: 3 GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
GVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 24 QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = +3
Query: 3 GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
GVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 24 QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = +3
Query: 3 GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
GVR AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 121 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 24 QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVII 77
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 6 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+R AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 155 LRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 189
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 24 QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVII 78
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 18 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
AQ LFV +++I IF LGL+G+IV I +
Sbjct: 136 AQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 27 PRLFVGMILILIFAEVLGLYGLIVAIYL 110
PR+ ++ +IF E + +YG+IVAI L
Sbjct: 55 PRITSKNLISVIFCEAVAIYGVIVAIIL 82
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 219 YRRRPSLCASSDSDNEHRGSEHGRRE 142
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -3
Query: 200 CARLQTQIMSIEA--RSTGDGSGVCSGR 123
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 147 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLH-RVSEHPSTLVYYICSLLVFTYLQTGA 314
+ R+P + H LSL + GM +VA GS H + E+PS ++ + S+ + L+
Sbjct: 21 IGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISG 80
Query: 315 A 317
A
Sbjct: 81 A 81
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 138 CVFRAFILCTGRWRR*VRKDPILQRK 61
C RA ++C RWRR + DP QR+
Sbjct: 28 CAVRASLVCK-RWRRLLTDDPCFQRR 52
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -2
Query: 378 KVFSKNIQIHVSRCGAAAATRLHRSGDM*KRAGNKCNIQEWKGAPKPYARWTR--YRRRP 205
KVFS N Q H + + + + H+S M G + G+PKPY+ + R P
Sbjct: 593 KVFSNNNQPHGAAFQHSHSYQDHKSEHMSSSPGTLTGPEFLWGSPKPYSEHAQSPIWRPP 652
Query: 204 SL--CASSDSDNEHRGSEHGRREWCVF 130
++ S++ ++ +G +G R+ +F
Sbjct: 653 AIGHAIPSNTRSQGQGLLYGGRQASLF 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,289
Number of Sequences: 37544
Number of extensions: 393738
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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