Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0903
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical pr...    68   5e-12
AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h at...    68   5e-12
AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein ...    68   5e-12
AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.      68   5e-12
Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.      62   3e-10
Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical pr...    34   0.079
AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.      34   0.079
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    29   3.0  

>Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical
           protein R10E11.2 protein.
          Length = 161

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 123 GVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 24  QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           +P L +  ++ +I A ++G+YGL+VA+ L
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79


>AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h
           atpase protein 3 protein.
          Length = 161

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 123 GVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 24  QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           +P L +  ++ +I A ++G+YGL+VA+ L
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79


>AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein
           protein.
          Length = 161

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 123 GVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 24  QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           +P L +  ++ +I A ++G+YGL+VA+ L
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79


>AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.
          Length = 161

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 123 GVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 24  QPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           +P L +  ++ +I A ++G+YGL+VA+ L
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79


>Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical
           protein R10E11.8 protein.
          Length = 169

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVR  +QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 131 GVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.
          Length = 169

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   GVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 110
           GVR  +QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 131 GVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical
           protein T01H3.1 protein.
          Length = 214

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  AQQPRLFVGMILILIFAEVLGLYGLIVAI 104
           A  P LFV +++I IFA  +GL+G+I+ I
Sbjct: 175 AANPALFVKILIIEIFASAIGLFGMIIGI 203


>AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.
          Length = 214

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  AQQPRLFVGMILILIFAEVLGLYGLIVAI 104
           A  P LFV +++I IFA  +GL+G+I+ I
Sbjct: 175 AANPALFVKILIIEIFASAIGLFGMIIGI 203


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3603 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3631


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3603 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3631


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265  TRVEGCSETLCKVDPLPATTIPVRVFRLR 179
            TRV   SE   +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 512 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 411
           S+K  S+++ K+ H CN  + Y  V A  H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 512 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 411
           S+K  S+++ K+ H CN  + Y  V A  H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 201 GMVVAGSGSTLHRVSEHPSTLVYYICSLL 287
           G++V GS S L++ +++   +V Y CSLL
Sbjct: 223 GVIVLGSNSVLYKPNDNLGEVVPYTCSLL 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,249
Number of Sequences: 27780
Number of extensions: 330897
Number of successful extensions: 848
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)