Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0902
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...   110   5e-26
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    33   0.017
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.27 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   1.9  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   1.9  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   2.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   3.4  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   3.4  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   4.4  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    24   7.8  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    24   7.8  

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score =  110 bits (265), Expect = 5e-26
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = +2

Query: 23  VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIK 202
           +  I  I+A NGV K+IVG NG LSTPA S+IIRKYK  GGI+LTASHN GG   DFGIK
Sbjct: 67  IQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGGIILTASHNAGGPKNDFGIK 126

Query: 203 FNCSNGGPASDATTDAIYKLT 265
           +N  NGGPA ++ T+ IY +T
Sbjct: 127 YNLGNGGPAPESVTEKIYSIT 147


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 89  ILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNG 220
           ++ TP V + ++   T  G+++TASHNP   +   G K    NG
Sbjct: 125 LVHTPLVPFAVKTLGTAAGVMITASHNPAAYN---GYKVYWGNG 165


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 125 KYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGG 223
           K KT+G +++TASHNP    ED G+K   ++GG
Sbjct: 40  KGKTIG-VMITASHNP---VEDNGVKIIDADGG 68


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 243 PMPSTNSPXSIKQYKIVPXF 302
           P+P+ NSP + + Y ++P +
Sbjct: 445 PLPTANSPIAYQSYSVMPTY 464


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 26  DKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKF 205
           D  I     NG   + +G  G+        ++R+Y +LG   +T +HN    D  F    
Sbjct: 125 DDAIAAFRNNGKIAIALGVEGLHQVDTSLAVLRQYYSLGVRYITLTHN---CDNPFATAA 181

Query: 206 NCSNGG 223
           +   GG
Sbjct: 182 SSITGG 187


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 122 RKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATT 244
           ++Y  L GI++T+++    +    G   N SN GP     T
Sbjct: 475 KQYMKLSGIIVTSNYRKNVLHLVVGCGINVSNLGPTVSLNT 515


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 113 YIIRKYKTLGGIVLTASHNPGGVDED-FGIKFNCSNGGPASDATTDAI 253
           Y+I+KY+ L  IV+  S+      E+   I  +  +  P+  AT DA+
Sbjct: 129 YVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDAL 176


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 277 FIEXGEFVDGIGGSIGSWASVTAVELYAKVFVHTARIVGRRENYTTE 137
           ++  G+FVD      GSW++  A  LYA   ++   +   R N+ T+
Sbjct: 241 YLFNGDFVDR-----GSWSTEVAFTLYAYKLLYPDAVFINRGNHETD 282


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 53  NGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDED 190
           N   + +     + +TP VS  I        +VLTAS +P     D
Sbjct: 452 NSALRSVTSGQSVSATPTVSMSIAATSFGSSLVLTASASPSSTSVD 497


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 35  IKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCS 214
           I+++  NG  K+ V  NG+ +   ++    KY  L  +   A    G  +ED   K   S
Sbjct: 61  IQVNTDNG--KVAVQSNGVSTKLRMAKYHSKYSALSSVFRYAGRLCGTFEEDLVDKSLDS 118

Query: 215 NGGPAS 232
           +  P S
Sbjct: 119 SVSPVS 124


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 47  AANGVSKLIVGQNGILSTPAVSYI 118
           A  G+SK  +G N +L T  VS +
Sbjct: 11  AIPGISKAFLGSNRVLETAGVSQL 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,032
Number of Sequences: 5004
Number of extensions: 24532
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)