Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0902
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 103 5e-23
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 97 4e-21
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 31 0.25
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607... 29 0.76
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 29 0.76
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 29 1.3
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484 28 1.8
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 27 4.0
05_05_0175 + 22966151-22967614 27 4.0
04_04_1232 - 31956286-31956463,31957822-31957880,31959343-319593... 27 4.0
04_01_0088 - 955276-955989,956551-956736 27 4.0
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 27 4.0
03_02_0006 + 4877200-4877386,4877820-4877884,4877996-4878041,487... 26 7.1
02_05_0784 + 31726453-31726563,31726820-31726897,31727307-317278... 26 9.3
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 103 bits (246), Expect = 5e-23
Identities = 46/75 (61%), Positives = 59/75 (78%)
Frame = +2
Query: 32 IIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNC 211
I KI+A NGV K++VG+NG+LSTPAVS +IRK + GG +++ASHNPGG D D+GIKFN
Sbjct: 102 ITKIAAGNGVGKILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNY 161
Query: 212 SNGGPASDATTDAIY 256
S+G PA + TD IY
Sbjct: 162 SSGQPAPETITDQIY 176
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 96.7 bits (230), Expect = 4e-21
Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 6/88 (6%)
Frame = +2
Query: 23 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPGGVD 184
V I K++AANGV ++ VGQN ++STPAVS +IR+ K G +LTASHNPGG
Sbjct: 72 VQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGPT 131
Query: 185 EDFGIKFNCSNGGPASDATTDAIYKLTT 268
EDFGIK+N NGGPA ++ TD I+ TT
Sbjct: 132 EDFGIKYNMENGGPAPESVTDKIFSNTT 159
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 8 EFGTRVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 124
+F ++D+++K + GV L + NG+ ST A SY+ R
Sbjct: 100 DFIRKIDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138
>09_04_0696 -
19559227-19559622,19559710-19559862,19559957-19560784,
19561727-19561842,19562286-19562319
Length = 508
Score = 29.5 bits (63), Expect = 0.76
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 8 EFGTRVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 124
+F ++D++++ + GV L + NG+ ST A SY+ R
Sbjct: 100 DFIRKIDRVMEKHSGIGVKALTIEFNGLFSTKARSYLER 138
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 29.5 bits (63), Expect = 0.76
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 96 DSIPFCPTINFETPFAALILIILSTLVPNSCS 1
+SIP+C T+N +T +++ ++ T+ P S
Sbjct: 698 ESIPYCSTLNKQTVSGSIVRVMNETMAPKPAS 729
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 8 EFGTRVDKIIK---ISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHN 169
EFG +K+ + G I+G NG + + I+ KT GG VL HN
Sbjct: 440 EFGFGEEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEKTQGGEVLLGEHN 496
>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
Length = 355
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 59 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGI 199
V KL Q + S V I K + G+V+ H P DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 143 GIVLTASHNPGGVDEDFGIKFNCSNGGPAS 232
G+V+TASHNP D G+K ++GG S
Sbjct: 68 GVVITASHNP---VRDNGVKIVDADGGMLS 94
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 142 WYSSHGVPQSGRCGRRLWHKV 204
W SS GVP+ CGR++ +V
Sbjct: 121 WESSPGVPKDAACGRKVVREV 141
>04_04_1232 -
31956286-31956463,31957822-31957880,31959343-31959385,
31959599-31959679,31959779-31959890,31960764-31960824,
31961853-31962518
Length = 399
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 107 VSYIIRKYKTLGGIVLTASHNPGGVDEDFGIK 202
+ YII +++ GGIV A+H P +++ ++
Sbjct: 177 LEYIIAEHRKKGGIVFVATHLPIEIEDAMSLR 208
>04_01_0088 - 955276-955989,956551-956736
Length = 299
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 225 GPPLLQLNFMPKSSSTPPGLW 163
GP L +L M ++++TPP +W
Sbjct: 53 GPGLHRLRLMNRAATTPPAIW 73
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 204 STAVTEAQLPMLPPMPSTNSPXSIKQY 284
+TA T+A P+LP MP N + Q+
Sbjct: 317 ATATTDAGSPVLPVMPKPNDTYTANQF 343
>03_02_0006 +
4877200-4877386,4877820-4877884,4877996-4878041,
4878152-4878205,4879330-4879562
Length = 194
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 131 KTLGGIVLTASHNPGGV 181
+TLGG LT SH GGV
Sbjct: 149 QTLGGSALTVSHQNGGV 165
>02_05_0784 +
31726453-31726563,31726820-31726897,31727307-31727843,
31728225-31728305,31728394-31728457,31728738-31728825,
31728934-31729018,31729103-31729186
Length = 375
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 47 AANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGV 181
++NG ++I QNG L P ++ + + K G++ H+ G +
Sbjct: 106 SSNGSMEIIPDQNGELGYPTLTPMGKSKKGKSGLLSRGKHSIGKI 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,093,305
Number of Sequences: 37544
Number of extensions: 178318
Number of successful extensions: 551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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