Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0902
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical pr... 118 1e-27
AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical ... 33 0.042
AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical ... 33 0.042
AF040647-2|AAB94995.3| 299|Caenorhabditis elegans Hypothetical ... 27 2.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 27 3.7
U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of c... 27 3.7
AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome... 27 3.7
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 4.9
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 26 8.5
>U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical
protein R05F9.6 protein.
Length = 568
Score = 118 bits (284), Expect = 1e-27
Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Frame = +2
Query: 32 IIKISAANGVSKLIVGQNGILSTPAVSYIIRKYK----TLGGIVLTASHNPGGVDEDFGI 199
IIKI+AANG+S+LIVGQNG LSTPA+S +IRK GGI+LTASHNPGG DFGI
Sbjct: 74 IIKIAAANGLSRLIVGQNGFLSTPALSNLIRKGHEGRVVDGGIILTASHNPGGPKGDFGI 133
Query: 200 KFNCSNGGPASDATTDAIYKLTT-LDK 277
KFNC NGGPA D TDAIY++TT +DK
Sbjct: 134 KFNCENGGPAPDQVTDAIYQITTKIDK 160
>AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical
protein Y43F4B.5b protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.042
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 98 TPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNG 220
TP VS+ K G+++TASHNP ED G K SNG
Sbjct: 130 TPVVSWATIKLGCDAGLIITASHNP---KEDNGYKAYWSNG 167
>AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical
protein Y43F4B.5a protein.
Length = 595
Score = 33.5 bits (73), Expect = 0.042
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 98 TPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNG 220
TP VS+ K G+++TASHNP ED G K SNG
Sbjct: 130 TPVVSWATIKLGCDAGLIITASHNP---KEDNGYKAYWSNG 167
>AF040647-2|AAB94995.3| 299|Caenorhabditis elegans Hypothetical
protein F54D12.5 protein.
Length = 299
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 201 SSTAVTEAQLPMLPPMPSTNSPXSIKQYKIVP 296
S+TA T ++LP P P +N +K+Y +VP
Sbjct: 91 SATATTSSKLPRCTPPPVSN--RQLKRYAMVP 120
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 225 GPPLLQLNFMPKSSSTPPGLWDAVRTI 145
GPP ++L +P+S+S L D +R+I
Sbjct: 520 GPPTVRLTAVPESNSDRRSLMDQIRSI 546
>U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of
calcineurin protein 1 protein.
Length = 207
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 222 PPLLQLNFMPKSSSTPPGLWDAVRTIPPRVLYF 124
PP L+ F+ +PP W+ + +PP V F
Sbjct: 119 PPPLEKQFLISPPCSPPVGWEQTKDMPPVVCNF 151
>AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome
candidate region1-like protein protein.
Length = 207
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 222 PPLLQLNFMPKSSSTPPGLWDAVRTIPPRVLYF 124
PP L+ F+ +PP W+ + +PP V F
Sbjct: 119 PPPLEKQFLISPPCSPPVGWEQTKDMPPVVCNF 151
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 201 SSTAVTEAQLPMLPPMPSTNSPXS 272
S+ AVT A LP+LP P +S S
Sbjct: 590 STPAVTSASLPLLPSSPEPSSSSS 613
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 201 SSTAVTEAQLPMLPPMPSTNSPXSIKQYKIVPXFKXAXIDKIDXXHTFQ 347
S+T T + +L P +T+S S KQ +IVP + I HT +
Sbjct: 1208 STTTTTLSSSNLLNPRGTTSSSSSKKQSRIVPVKDGMRGNVITRTHTLE 1256
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 201 SSTAVTEAQLPMLPPMPSTNSPXSIKQYKIVPXFKXAXIDKIDXXHTFQ 347
S+T T + +L P +T+S S KQ +IVP + I HT +
Sbjct: 1208 STTTTTLSSSNLLNPRGTTSSSSSKKQSRIVPVKDGMRGNVITRTHTLE 1256
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 89 ILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATTDAIY 256
I+ T S +I K+ +GGI S GG G +F GG AS ++Y
Sbjct: 5 IIITLLCSEVIGKFGRIGGIGGAKSIGRGG----GGARFGVGRGGGASTVRGSSVY 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,633,634
Number of Sequences: 27780
Number of extensions: 146256
Number of successful extensions: 378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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