Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0902
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.15 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   0.78 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 31  NY*D-QCSEWGFEIDSRTKWNTINSCCVL 114
           NY D +  +   EI +R K NT+ + CVL
Sbjct: 459 NYIDKETKDMNLEISTRPKSNTVENACVL 487



 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 64  RNPIRCTDLNN 32
           +NPI  TDL+N
Sbjct: 590 KNPIEFTDLSN 600



 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 207 TAVTEAQLPMLPP 245
           T  TE +LP LPP
Sbjct: 630 TQETEERLPPLPP 642


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 172 GRCGRRLWHKVQLQ*RRPSFRCYHRCH 252
           G C   L HK+++    P + C  RC+
Sbjct: 453 GLCPYTLKHKIRVPPGTPIYECNKRCN 479


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 240 PPMPSTNSPXSIKQYKI 290
           PP PS++ P S K  KI
Sbjct: 345 PPPPSSSGPDSAKLDKI 361


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 64  RNPIRCTDLNNFINPRAEFL 5
           RN I C D N  +NP    L
Sbjct: 318 RNGIACWDTNTELNPNTFIL 337


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 49  SEWGFEIDSRTKWNTINSCC 108
           S+W F++   TK   + +CC
Sbjct: 215 SKWDFKVIKATKVLKMYACC 234


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 225 QLPMLPPMPSTNSPXSIK 278
           Q P+ PP P   +  SIK
Sbjct: 208 QSPLCPPAPRLTNSNSIK 225


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 239 TTDAIYKLTTLDK 277
           T D +Y+LT +DK
Sbjct: 266 TIDRLYELTKIDK 278


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 225 GPPLLQLNFMPKSSSTP 175
           GPP + L+  P+   TP
Sbjct: 129 GPPSVSLSSPPREPGTP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,502
Number of Sequences: 438
Number of extensions: 1771
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)