Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0899
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    29   0.45 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.45 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   4.2  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   7.3  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   7.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.7  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 179 DALKQSLLFIFIEHGYLSAEAENFKENPSTTEDT 280
           D+LKQSL FI ++   L     + KE PST ++T
Sbjct: 543 DSLKQSLSFINLDASALKDREPSEKELPSTAKET 576


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 526 ARNSVAFVYGLIRKSSH-RSGSTRTVTGACGRYHRYWIGR-IRNN 654
           AR  +  VY +I+++ + RS + R  +  CGR  R W  R I+NN
Sbjct: 631 ARKEIPRVYKIIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNN 675


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 28  LRQMPSWFFLKFEKGLVWLYFSIL 99
           L + PSW+    E GLV LY  ++
Sbjct: 46  LNEAPSWYKYSLESGLVCLYLYLI 69


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 246 ISKKIQAPLKILSCKTFYYFLDINHASKYAGQSVNTAFLSTCADSLERLLQLRPS 410
           I+ K       +S  T  +F D    SK++  +VNTA  S  +D++ER    +PS
Sbjct: 273 INLKDDESFSFISRLTSVHFCDRQIFSKFS--AVNTASTSKTSDTIERASFSKPS 325


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 320 RFKICRTVS*YGVSFYV 370
           +F +CRTV+  G+S YV
Sbjct: 104 KFHVCRTVALLGISLYV 120


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 375 DSLERLLQLRPSM*VSSRGSNRSVANTGPSKSSA 476
           DS   L  L+ +  ++S+GSN S  N+G S SS+
Sbjct: 287 DSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 643 SSRSNNGGTYHKRQSPSSSNPTDGSTCELTHRQRPLSFS 527
           SS + +  + H  +  ++S+PT  S    TH   P S S
Sbjct: 149 SSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,347
Number of Sequences: 5004
Number of extensions: 46919
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)