Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0899
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0168 - 13640894-13641973                                         30   1.4  
02_04_0042 + 19182251-19182562,19182626-19182853                       29   4.3  
02_01_0276 - 1838028-1838098,1838543-1838864                           29   4.3  
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319           28   5.7  

>08_02_0168 - 13640894-13641973
          Length = 359

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 658 SRYYGSSRSNNGGTYHKRQSPSSSNPTDGST 566
           +R +G   SN+GG  HK+ S    +P  G T
Sbjct: 235 TRNHGDKNSNSGGPVHKKSSSQRHHPYHGGT 265


>02_04_0042 + 19182251-19182562,19182626-19182853
          Length = 179

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 97  LCNVLCGHGCS*VLTVGSLLDL 162
           LC V+CG GCS V  VG ++ +
Sbjct: 72  LCAVICGGGCSLVAAVGEVVPM 93


>02_01_0276 - 1838028-1838098,1838543-1838864
          Length = 130

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 92  VFCATCCVVTGAHRCSR 142
           +FC TCCV+   H C+R
Sbjct: 57  LFCFTCCVLKPIHNCTR 73


>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
          Length = 133

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +2

Query: 92  VFCATCCVVTGAHRCS---RLAAY*IYIGSDC 178
           VFC +CCV    H C+     AA     G DC
Sbjct: 54  VFCGSCCVFNPVHNCTSTDAAAAAPAIAGDDC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,911
Number of Sequences: 37544
Number of extensions: 301304
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)