Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0899
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 29 2.2
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 29 2.2
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 29 2.2
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 29 2.2
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 29 2.2
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 29 2.2
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 29 2.2
AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical ... 29 2.2
U39666-3|AAA80410.2| 178|Caenorhabditis elegans Hypothetical pr... 28 5.1
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 646 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 700
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 799 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 853
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 766
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 766
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 766
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 646 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 700
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 309 DINHASKYAGQSVNTAFLSTCADSLERLLQLRPSM*VSSRGSNRSVANTGPSKSS 473
D S +G+ +NT+ ST + SLER + +P ++S S + SK S
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMS 766
>AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical
protein C01B4.7 protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 85 YFSILCNVLCGHGCS*VLTVGSLLDLYW**L*CPQAKSSLYL 210
Y + C VL G G S +LTV ++ YW P+ + S YL
Sbjct: 144 YLVVFCRVLQGIGISVILTVLGVIPSYW----SPKTEYSTYL 181
>AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical
protein Y19D10A.4 protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 85 YFSILCNVLCGHGCS*VLTVGSLLDLYW**L*CPQAKSSLYL 210
Y + C VL G G S +LTV ++ YW P+ + S YL
Sbjct: 144 YLVVFCRVLQGIGISVILTVLGVIPSYW----SPKTEYSTYL 181
>U39666-3|AAA80410.2| 178|Caenorhabditis elegans Hypothetical
protein K04E7.1 protein.
Length = 178
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +1
Query: 7 VNFVIQLLRQMPSWFFLKFE-KGLV-------WLYFSILCNVLCGHGCS*VLTV 144
V+FV+ + + SW + F KG V WL S++ +CG C+ +L V
Sbjct: 48 VSFVVYVTNSICSWLHISFVVKGYVTSFPLNTWLVVSLVVTAVCGSMCTWLLLV 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,023
Number of Sequences: 27780
Number of extensions: 266613
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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