Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0899
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 484 IYHRIGNATH*DDPARNSVAFVYGLIRKSSHRSGSTRTVTGACGRYHRYW 633
           +Y RIG     D  A N   +V+G  ++   R   TR ++     +   W
Sbjct: 224 LYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITRMLSAVVITFFICW 273


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 12  FRNSIIATNALVVLLEVREGTRMVIF*YFVQRVVWSRVLIG 134
           F  + +  N LV+L  VRE        YFV  + ++  L+G
Sbjct: 55  FSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVG 95


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 303 FLDINHASKYAGQSVNTAFLSTCADSLERLLQLRP 407
           F+D+  A   A    +   LS C+   ++LL   P
Sbjct: 35  FVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNP 69


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 25  LLRQMPSWFFLKFE 66
           LLR  P W F K+E
Sbjct: 109 LLRPYPDWSFAKYE 122


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 104 LHKILKYNHTSPFSNFKKNHEGICRN 27
           +HK L  N+       K  H G+ RN
Sbjct: 129 IHKDLPINNVQGLRGLKSCHTGVGRN 154


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 104 LHKILKYNHTSPFSNFKKNHEGICRN 27
           +HK L  N+       K  H G+ RN
Sbjct: 129 IHKDLPINNVQGLRGLKSCHTGVGRN 154


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 104 LHKILKYNHTSPFSNFKKNHEGICRN 27
           +HK L  N+       K  H G+ RN
Sbjct: 129 IHKDLPINNVQGLRGLKSCHTGVGRN 154


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 36  NALVVLLEVREGTRMVIF*YFVQRVVWSRVLI 131
           N LV+L  VRE     +  YF+  +  + +L+
Sbjct: 204 NVLVILAVVRERALQTVTNYFIVSLAVADLLV 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,338
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)