Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0897
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   110   9e-26
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   1.0  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   1.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   2.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   3.2  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   4.2  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 805

 Score =  110 bits (265), Expect = 9e-26
 Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
 Frame = +3

Query: 36   DDFMFSGQMFIQKLFVIVALLCVPIMLFGKPYFIMREQKQRARQGHQPVXXXXXXXXXXX 215
            +D ++ GQ ++Q   VI AL+CVP +L  KP+ + R       + +Q +           
Sbjct: 611  EDQLYPGQKYLQVGLVIAALICVPWLLIVKPFVLWRRHSNEENK-YQSLNSDLPNVDEAD 669

Query: 216  XPVPASGHHDE----EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAW 383
              +       +    E+ EV IHQ IHTIEF LG VSHTASYLRLWALSLAH QL+ V W
Sbjct: 670  ALMAVDSQEKQAEPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLW 729

Query: 384  NMLLRKGLMSNDYQGGIFLYVVF 452
            NM L  G       G IF+ ++F
Sbjct: 730  NMTLANGFRMTGIVGSIFVVILF 752


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 381 WNMLLRKGLMSNDYQGGIFL 440
           WN+++ K ++SND Q  IFL
Sbjct: 360 WNVIIDKIIVSNDQQSSIFL 379


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 409 IRPFLSSMFQATSASCACARESAHSRRYDAVCDTL 305
           IRPF   +FQ+++ + A ++E+  SR +D   D++
Sbjct: 76  IRPFGDRIFQSSTNNSAISKETLDSRIFDNDHDSI 110


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 243 DEEITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQ-LAEVAWNM 389
           D+   EV I+  +  ++F+L SVS   S++R W+ +   A+ ++ + WN+
Sbjct: 300 DDSNEEVHIYLEV-IVDFLLSSVSDIDSFVR-WSAAKGLAKIISRLPWNL 347


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 324 SYLR-LWALSLAHAQLAEVAWNMLLRKGLMSNDYQ 425
           S+L+ LW+LSL H QL+      L+ +G+M + YQ
Sbjct: 142 SFLQSLWSLSLQHRQLSS-----LILRGIMEDLYQ 171


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 364 CACARESAHSRRYDAVCDTLPNTNS 290
           C C+ +++H  +Y A+C   P+T++
Sbjct: 23  CCCSPQTSHWCKYPALCLKSPDTHN 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,450
Number of Sequences: 5004
Number of extensions: 22091
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)