Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0897
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 105 2e-23
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 104 3e-23
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 104 3e-23
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 29 2.4
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 28 4.2
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 28 4.2
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 27 7.3
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 27 9.6
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 105 bits (251), Expect = 2e-23
Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Frame = +3
Query: 45 MFSGQMFIQKLFVIVALLCVPIMLFGKPYFIMREQKQRAR-QGHQPVXXXXXXXXXXXXP 221
+F GQ +Q + +++AL+ VP ML KP+F+ E ++R + Q + +
Sbjct: 630 LFPGQKTVQLVLLLLALVSVPWMLIPKPFFLKMEHERRHQGQQYAMLQSTDDSVVAEMGH 689
Query: 222 VPASGHHDE-EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 395
S HH+E E +EVF+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V ++ +L
Sbjct: 690 HNGSNHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVL 748
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 104 bits (250), Expect = 3e-23
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Frame = +3
Query: 45 MFSGQMFIQKLFVIVALLCVPIMLFGKPYFIMREQKQRARQGHQPVXXXXXXXXXXXXPV 224
+F GQ +Q + +++AL+ VP ML KP+F+ ++ +QR QG Q
Sbjct: 593 LFPGQKLVQLVLLLLALVSVPWMLIPKPFFLKKQHEQR-HQGQQYTMLQATDESVTELEE 651
Query: 225 PASG--HHDE-EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 395
HH+E E +EVF+HQ IHTIEFVLG+VS+TASYLRLWALSLAH++L+ V + +L
Sbjct: 652 HQDDPHHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVL 711
Query: 396 RKGLMSNDYQGGIFLYVVFA 455
++S Y IF+ ++ A
Sbjct: 712 ---VLSWGY-NNIFILIIGA 727
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 104 bits (250), Expect = 3e-23
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +3
Query: 45 MFSGQMFIQKLFVIVALLCVPIMLFGKPYFIMREQKQRARQGHQPVXXXXXXXXXXXXPV 224
+F GQ +Q L +++A++ VP MLF KP+ + + K+R QGH P
Sbjct: 629 LFWGQKELQILLLLMAIVAVPWMLFPKPFILKKLHKERF-QGHTYRFLGTSEMDPDSEPD 687
Query: 225 PASGHHDE-EITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 395
A HD+ +EVF+HQ IH+IEFVLG+VS+TASYLRLWALSLAH++L+ V + LL
Sbjct: 688 SARSRHDDFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKLL 745
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 340 HSRRYDAVCDTLPNTNSMVWMAW*MKTSVISSS*CPEAGTGAPPAVPFSALPSTGW 173
H++R D C L +++ +V TSV+++S E + + + F+ PS+ W
Sbjct: 82 HNKRTDRACPFLHSSSIIVSKPEFDTTSVLATSVAMEVVSSSHSCLAFNRTPSSAW 137
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 236 TSRRRDHRGLHSPGHPHHRVR 298
TS + +RGL GH HH+ R
Sbjct: 270 TSAGKKYRGLRGKGHTHHKAR 290
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 236 TSRRRDHRGLHSPGHPHHRVR 298
TS + +RGL GH HH+ R
Sbjct: 165 TSAGKKYRGLRGKGHTHHKAR 185
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 214 PPAVPFSALPST-GW*PCLARCFCSRMMKYGFPNSMMG 104
PP +P A+P+T G CL CF ++ FP++ G
Sbjct: 16 PPPLPPVAVPTTCGCAACLQGCFVPVGVQAAFPHAAAG 53
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 137 DEVRLPEQHDGHAQQSHDHEQLLYEHLSGEHE 42
DE ++ E HDGHA SHD+ E +H+
Sbjct: 240 DESKVAEHHDGHA-TSHDNHTPESESSVEQHD 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,439
Number of Sequences: 37544
Number of extensions: 176265
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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