Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0897
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 116 QHDGHAQQSH--DHEQ-LLYEHLSGEHEVVALRRACSPGIH 3
           QH   AQQ H   HEQ ++Y+    + +  A  +   PG+H
Sbjct: 185 QHQSQAQQQHLQAHEQHMMYQQ---QQQSQAASQQSQPGMH 222


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83 HEQLLYEHLSGEHE 42
          H  ++YE L G HE
Sbjct: 42 HTYIIYESLCGRHE 55


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83 HEQLLYEHLSGEHE 42
          H  ++YE L G HE
Sbjct: 42 HTYIIYESLCGRHE 55


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -1

Query: 122 PEQHDGHAQQSHDHEQLLYEHLSGEH 45
           P QH  H  Q H H      H  G H
Sbjct: 318 PHQH--HPSQYHPHRGSSPHHQHGNH 341


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 401 GSDVQRLPGRDLPVRGV 451
           G++    PG++LP RG+
Sbjct: 59  GANALFTPGQELPARGL 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,494
Number of Sequences: 438
Number of extensions: 1541
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)