Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0896
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 254 5e-68
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 35 0.050
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 34 0.087
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 32 0.47
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 4.3
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 29 4.3
11_02_0137 - 8702661-8703495,8703820-8704628 28 5.7
04_03_0074 - 10705413-10705523,10705602-10706330 28 5.7
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 28 5.7
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 254 bits (622), Expect = 5e-68
Identities = 111/118 (94%), Positives = 117/118 (99%)
Frame = +2
Query: 305 INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTT 484
INYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAEER+DGSRRTT
Sbjct: 78 INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTT 137
Query: 485 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNGDKWESEI 658
RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEF+TETHEELLY+KEKLL NGD+WE+EI
Sbjct: 138 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEI 195
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +2
Query: 404 KLCEAICPAQAITIEA----EE--RKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 556
K CE +CPA AI +E EE + D S + +C CG C CP D I
Sbjct: 134 KPCEKVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYGCGRCLSVCPYDRI 190
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 34.3 bits (75), Expect = 0.087
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 383 EERCIACKL---CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 553
E+RC K C CP A + E SR + I CI CG C + CP DA
Sbjct: 17 EDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSL---ISEELCIGCGICVKVCPFDA 73
Query: 554 I 556
I
Sbjct: 74 I 74
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 383 EERCIACKLCEAICPAQAITI 445
EE CI C +C +CP AI I
Sbjct: 56 EELCIGCGICVKVCPFDAIQI 76
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 104 AQYSSSSEGNVEMVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWT-ELARGFAVTLA 280
A Y S + N+ YP++ P YK + ++ F + D + T+F +L G+ V +
Sbjct: 189 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYFPDLDDPSFNTVFGVRDLFYGYDVLVE 248
Query: 281 HIFKEPATINY 313
++ +PA + Y
Sbjct: 249 NLM-DPAHVPY 258
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 509 CIYCGFCQEACPVDAI 556
CI CG C + CP DAI
Sbjct: 55 CIGCGICVKKCPFDAI 70
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 383 EERCIACKLCEAICPAQAITIEAEERKDGSRRTT-RY 490
EE CI C +C CP AI I KD + TT RY
Sbjct: 52 EELCIGCGICVKKCPFDAIEI-INLPKDLEKDTTHRY 87
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 530 QEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNG 637
+EA +D + E PN + ST T EE+ +E + +G
Sbjct: 208 EEAKEIDILDEAPNCDQSTATDEEIADTEESIAYDG 243
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 202 RHVLFLCIHIFISRYVLW 149
RH+L LCI +F++ Y W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137
>04_03_0074 - 10705413-10705523,10705602-10706330
Length = 279
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 101 RAQYSSSSEGNVEMVYPQNIPGYKYVN--AEEQDMSFRAMSDR 223
RA+Y + +G + M YP++ Y+ +N EQ S A S R
Sbjct: 218 RARYQKNVDGTIFMPYPEDQRVYRAINELVAEQQASQEACSQR 260
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 626 EVSPYCIKVPHVSLLKTRNSDLPRLHQPDRLLDRS 522
+++ C++VP+ +L+ D +LH+PDRL D S
Sbjct: 407 DLTSQCLEVPN--MLELCGLDPHKLHRPDRLQDNS 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,531
Number of Sequences: 37544
Number of extensions: 374507
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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