Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0896
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical pr... 282 2e-76
AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH oxidored... 282 2e-76
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 32 0.31
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 28 5.1
U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical
protein T20H4.5 protein.
Length = 212
Score = 282 bits (691), Expect = 2e-76
Identities = 130/170 (76%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
Frame = +2
Query: 152 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 328
Q YK+V E D + + +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32 QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91
Query: 329 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 508
PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92 PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151
Query: 509 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNGDKWESEI 658
CIYCG CQEACPVDAIVEGPNFE+STETHEELLYNKEKLL NGD+WE E+
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPEL 201
>AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH
oxidoreductase complex I 23.8kDa subunit protein.
Length = 212
Score = 282 bits (691), Expect = 2e-76
Identities = 130/170 (76%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
Frame = +2
Query: 152 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 328
Q YK+V E D + + +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32 QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91
Query: 329 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 508
PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92 PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151
Query: 509 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNGDKWESEI 658
CIYCG CQEACPVDAIVEGPNFE+STETHEELLYNKEKLL NGD+WE E+
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPEL 201
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +2
Query: 323 KGPLSPRFRGEHALRRYPSGEERCIA--CKL-CEAICPA-----QAITIEAEERKDGSRR 478
KGPL + LR ++RC C L C+ CP Q I +EA
Sbjct: 4 KGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEAT-------- 55
Query: 479 TTRYDIDMTKCIYCGFCQEACPVDAI 556
+T I CI CG C + CP DAI
Sbjct: 56 STISQISEILCIGCGICVKKCPYDAI 81
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 198 MSCSSAFTYLYPGMF---CG*TISTFPSDDELY 109
+S + TY YP ++ C I+TFP DD++Y
Sbjct: 173 VSYTGEVTYAYPAIYTVLCQIGIATFPFDDQVY 205
>U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical
protein F33G12.2 protein.
Length = 305
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 422 CPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 523
CP + A + K G+ R RY++D C+ CG
Sbjct: 4 CPT--VRARAIDCKQGAVRAVRYNVDGNYCVTCG 35
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/64 (21%), Positives = 26/64 (40%)
Frame = +2
Query: 410 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTE 589
CE C I ++ + ++ ++ I + C+ CQ AC + + PNF
Sbjct: 449 CETKCIVAQIVLKIKNSYQQPQQLSQQYIPQSSCV--PQCQPACTQECVAAQPNFSVQIN 506
Query: 590 THEE 601
+E
Sbjct: 507 MIDE 510
>Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical
protein F10F2.4 protein.
Length = 656
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -3
Query: 460 TLF--CFNRDSLCWTNGFAQLTS 398
TLF C NRDS CW++ +LTS
Sbjct: 456 TLFSRCPNRDSPCWSDHLDELTS 478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,206
Number of Sequences: 27780
Number of extensions: 346906
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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