Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0895
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   2.1  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.6  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   4.8  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.4  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.4  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 441 TVSCNILILNTIFQQNKKCIIFPFFLGKIGTYVG*FGTRLEKLGTRKHKI 292
           T++  IL+L    ++N+ C+IF   L K    VG     L+ L   K+KI
Sbjct: 612 TIASVILLLFQDLKENQ-CLIFEEILEKTNIEVGDLKRNLQSLACAKYKI 660


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = -3

Query: 600  LVPKIRQIKL---KIVVEKCVLKQLTELLKK 517
            L+P++R I L   KIV++K  LKQ+T   K+
Sbjct: 1108 LIPRLRAIHLGKGKIVIKKAPLKQITSKTKE 1138


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 472 IFNTSGNTTTNGKLQYSYFKYNISTK 395
           +FN + N T NGK   S F  N++ K
Sbjct: 398 VFNATVNFTRNGKFNTSIFSSNLNPK 423


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 292 NFVFSRP*FFQSRSKLP--YIRPNFPQKERKNYTFFILLKYCI*NKNIATYRLLW 450
           +++   P  F SRS     +IR   P + R N  F+    Y +  +N   Y  LW
Sbjct: 277 DYIHQSPSIFPSRSAKTQRFIRKGIPPEYRGNAWFYYSGGYELLQRNPKLYETLW 331


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -3

Query: 588 IRQIKLKIVVEKCVLKQLTELLKKVILSLFFQ*DHSLYKFLIHLEIPQQTVSCNILILNT 409
           I + +L+  +EK +   L +L +  +LS+F+      + FL      QQT+   I++  +
Sbjct: 53  ITEFQLQRCMEKFLNSPLYQLDENAVLSIFYD----CFFFLKE----QQTLKFIIIVFQS 104

Query: 408 IFQQNKKCI 382
             Q+N+ C+
Sbjct: 105 EIQENEYCL 113


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 728 GQTCGRFSKYL*HGIYLILFMLIFINV*KKNQVNYGSTK 612
           GQ+     K   H +YL +F L+F+ + +   +  G+TK
Sbjct: 32  GQSRNLSQKIFWHPLYLAVFGLVFMGIYRLTNMVEGNTK 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,793
Number of Sequences: 5004
Number of extensions: 61352
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)