Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0895
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    35   0.058
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    29   3.8  
05_03_0137 + 8810420-8810485,8810848-8810940                           28   6.6  
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127...    28   8.8  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 361 ENWDVCRVIWNETGKIRDEKTQNWNAKRQNRDGLLGLSLIS 239
           E W V + I N+  ++ DE TQN + +R  RD  LG+ + S
Sbjct: 854 ECWSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCS 894


>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
            12560848-12561389,12561398-12564827
          Length = 1455

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/48 (25%), Positives = 29/48 (60%)
 Frame = -3

Query: 714  KILKVPVARNLPNFVYVNIYQCIEEKPS*LWKH*I*VKLVPKIRQIKL 571
            ++ K+ V+++L N  ++ +Y+C    PS LW      +L P++ ++++
Sbjct: 1161 QLTKIEVSQSLCNLRFLKVYKCPSLSPSFLWFPGRVDELFPRLERLEI 1208


>05_03_0137 + 8810420-8810485,8810848-8810940
          Length = 52

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 324 VSFQITLHTSQFSPKRKEKLYIFYFVEILYLK*EYCNL 437
           +SF  T+H  Q  P+     ++ +F +++Y+K  Y  L
Sbjct: 9   LSFSTTIHVRQARPELLAVKFVVFFSKLVYIKFNYAYL 46


>01_07_0369 -
           43111835-43111882,43112172-43112245,43112670-43112754,
           43112930-43113022,43113099-43113163,43114051-43114142,
           43114240-43114527,43114642-43114706,43115421-43115502,
           43115578-43115669,43116169-43116301,43116380-43116501,
           43116624-43116725,43116853-43116892,43117032-43117103,
           43117241-43117320,43117444-43117818
          Length = 635

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 226 KIYYKISVTTLTIHPYFVFWRSNFVFSRP*FFQSRSKLPYIRPNF 360
           K+   +     T+HP  +F  SNF+ S   F  S S  P   P +
Sbjct: 308 KVISLVGAQKATLHPDDIFLLSNFILSSESFRTSESFSPICLPRY 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,681
Number of Sequences: 37544
Number of extensions: 300493
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)