Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0893
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    95   3e-21
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   0.99 
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.0  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   7.0  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    24   9.3  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   9.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    24   9.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    24   9.3  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 95.5 bits (227), Expect = 3e-21
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +2

Query: 62  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 241
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 242 KLAGTSKEDAQKAYIEIVEGLIASIGLK 325
           +L G SKEDA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +2

Query: 74   FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 244
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 245  L-AGTSKEDAQKAYIEIVEGL 304
                  KE A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 LPTDAQLLNLYAHFKQATV 169
           LP +   ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 443 WRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 324
           W QK    D  A+N  YL S +      HV+ S  I S IL
Sbjct: 676 WVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 77  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 181
           DQ   NV++  + P   QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 195 GLLAGSASPTVACLKWAYKL 136
           G  AG A   ++CL WA++L
Sbjct: 136 GYHAGFAGSAISCLVWAHQL 155


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 98  KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLK 214
           +N    PT  +   L     Q  +G + P N P LL +K
Sbjct: 501 QNNMVFPTSDRDTRLQNSLAQQPIGHSTPHNSPSLLSVK 539


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 SLTCMPISNRPQLEMPIQPI 191
           +LT + +SNR   E PIQP+
Sbjct: 19  ALTTLSLSNRNHEEDPIQPV 38


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 264 SFEVPASLCQASNLALPFKSRRP 196
           S+ +PA + Q  N  +P K+ +P
Sbjct: 30  SYSLPAPVAQKKNAQIPLKASKP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,983
Number of Sequences: 5004
Number of extensions: 36385
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)