Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0891
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 31 1.00
08_02_0885 + 22268287-22268988 31 1.3
11_01_0064 + 489196-489261,489594-489938 30 2.3
06_01_0768 + 5742938-5743196,5743291-5744729 30 2.3
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 4.0
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009... 28 7.0
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 28 7.0
08_02_1136 - 24614236-24615207 28 9.3
02_05_0458 + 29212123-29212403,29213748-29213772 28 9.3
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 216 LALPAVQLLETPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV--LRRADSVTR 389
L + A L T +++KF+ K+LD E + +Y+ PE++ S++++++ L + R
Sbjct: 168 LGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKI-SKSKRFMSKLEKCHHAGR 226
Query: 390 LGTAVLD 410
L +D
Sbjct: 227 LSLIAID 233
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 544 LKGRRAGPGQPRRCSMEPGSRGSC--RGDSPGKLWPK 648
+KG+ A P PRRC GS +C R + P + W K
Sbjct: 51 VKGKTAIPATPRRCRRPDGSNPACKMRWERPPEGWMK 87
>11_01_0064 + 489196-489261,489594-489938
Length = 136
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -1
Query: 292 TSSDLQRNLSSCTIGVSRS*TAGSASCMPVARDFSPRDIDQRNRGLDSLILKYNFSVTPI 113
T +D + + TIG + S T + + R +P DID R+R + +S+T
Sbjct: 43 THTDHETINTITTIGTTTSSTPNTINIQAYIRQDTPPDIDFRDR--------HGYSLTVS 94
Query: 112 PDTTIGMDATLETTSRFG 59
PDT ++T+ +R G
Sbjct: 95 PDTVRRDESTISDLARHG 112
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 191 LTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 45
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 75 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 227
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>02_05_0285 -
27498946-27499122,27499944-27500108,27500828-27500960,
27501052-27501171,27502436-27502980
Length = 379
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 EEYAFNLYASRGDVLRDASIRAP---TCGFRDAARHSCLGFADDGGHRDRSRPCAHH 460
E+ + N+ S G ++ + P DA CL DDG R PC HH
Sbjct: 289 EKQSVNMTGSSGGIMIECGTNQPIEKVLAAEDAECCICLSAYDDGAEL-RELPCGHH 344
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 242 GNSDCTTGQVSLQVAGCGREEYAFNL 319
G DC G++ L AG R E AFN+
Sbjct: 161 GTIDCYEGELQLLPAGARRREIAFNM 186
>08_02_1136 - 24614236-24615207
Length = 323
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 647 FGQSLPGESPLQLPLEPGSMLHRLGCPGPARLPFRP 540
FG + P SP P E G +LH G P P F P
Sbjct: 228 FGTTSPAPSPPP-PQERGGVLHNAGEPQPQHTVFDP 262
>02_05_0458 + 29212123-29212403,29213748-29213772
Length = 101
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 17 RGPLYNDENKSASHAES*SGLKGCIHTDRRVRY 115
+G YN N S+S + S S +G + D+R RY
Sbjct: 65 QGSHYNSSNASSSSSSSSSNSRGSANEDQRRRY 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,919
Number of Sequences: 37544
Number of extensions: 505809
Number of successful extensions: 1697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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