Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0891
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    35   0.055
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    35   0.055
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   6.3  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   6.3  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 701 NQFRDIHXNVDLFFDSLGFGQSLPGESPLQLPLEPGSMLHRLGC 570
           + FRD+H N+DL  D+     S  G + + L +E G  + R GC
Sbjct: 82  DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 125


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 701 NQFRDIHXNVDLFFDSLGFGQSLPGESPLQLPLEPGSMLHRLGC 570
           + FRD+H N+DL  D+     S  G + + L +E G  + R GC
Sbjct: 155 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 198


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 42  TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 212
           TN+ A   L     V S    VSG   + +  K YF  ++S+PL +  + LG  ++A  I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186

Query: 213 QLAL 224
            + +
Sbjct: 187 NIPM 190


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = -2

Query: 369 VGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSEFPGVEP---PGVLAVCRSL 199
           V   I  SL T+ ++A      SS+P  AT  E  P+  S  P  EP   P       S 
Sbjct: 303 VSTTISTSLETTIMQASSASPISSKP--ATTTEPSPLQASSKPATEPLLQPESARTASSS 360

Query: 198 GTSHPGT*TN-ETEGWTP 148
            +S P   T   TE  TP
Sbjct: 361 ASSKPEVQTTIPTEIQTP 378


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 RDASIRAPTCGFRDAARHSCLGFADDGGHRD-RSRPC 451
           RD ++R  TC   +    +CL  A + GHR   + PC
Sbjct: 797 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 833


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 RDASIRAPTCGFRDAARHSCLGFADDGGHRD-RSRPC 451
           RD ++R  TC   +    +CL  A + GHR   + PC
Sbjct: 797 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 833


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 RDASIRAPTCGFRDAARHSCLGFADDGGHRD-RSRPC 451
           RD ++R  TC   +    +CL  A + GHR   + PC
Sbjct: 784 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 820


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 81   RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 191
            R+ S+P++   IGVTE   + + E+  L  W++ LG+
Sbjct: 984  RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,014
Number of Sequences: 27780
Number of extensions: 383954
Number of successful extensions: 1151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)