Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0891
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 650 GFGQSLPGESPLQLPLEPGSMLHRLGCPGPARLPFRP 540
           G+G+ LPG + +  P    + +     PG   LP  P
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASP 245


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 546 EGETGRARAAQAVQHGARFKRKLQRRLTRQALAEA 650
           EG++GR+R +    + A   ++  RR  + AL EA
Sbjct: 25  EGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEA 59


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 262
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 391 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 262
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 411 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 262
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 360 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 89  IHTDRRVRYWSDRKIVLQ 142
           I  DRR R+ SDR + L+
Sbjct: 335 IQNDRRTRHLSDRVVALE 352


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 546 EGETGRARAAQAVQHGARFKRKLQRRLTRQALAEA 650
           EG++GR+R +    + A   ++  RR  + AL EA
Sbjct: 25  EGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEA 59


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 92  HTDRRVRYWSDRKIVLQN 145
           H D R+RYW    +V+ +
Sbjct: 275 HNDGRLRYWRTPSVVVSD 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,267
Number of Sequences: 438
Number of extensions: 4814
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)