Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0886
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     29   0.39 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   3.6  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   4.8  

>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 512 DFINCIYVFEVTTGMKFAHPDFILLRKSGHKEVRLACTNI*GKITTGFSNA 360
           D++N + V+    G++  + + ++LR +GH  V   C NI   I + F +A
Sbjct: 286 DYLNLVRVYTRPRGLEPDYSEPVILR-TGHSTVEDFCNNIHSSIKSQFKHA 335


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 459 GKLHACSDFKNIYAVDEVYYVDEIKDVLKSLM 554
           G  ++ SD+ ++Y VDE+   + +++ +K L+
Sbjct: 308 GTYYSISDYTDVYGVDELQLFESLENCIKPLV 339


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   TRDRRRCLFSVRYFRPYQNSCNLS 80
           T  R+ C + +RY RPY +S   S
Sbjct: 414 TNIRKECTYDIRYKRPYVSSLKYS 437


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 396 VSTGKSYLFVPRLPEEYEVWMGKL-HACSDFKNIYAVDEVYYVDE--IKDVLKSLMPETL 566
           ++TG  ++F+P  P E   W  +L ++ S  + +     +  V E  I   L  + PE +
Sbjct: 400 LATGADFVFIPERPAEVGKWQDELCNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDI 459

Query: 567 LTL 575
             L
Sbjct: 460 KNL 462


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -2

Query: 578 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEVTTGMKFAHPDF 447
           R CQ+C  H  +     + +I  F N IY            PDF
Sbjct: 238 RSCQKCMEHFLYYGCLIIADIFQFHN-IYAMTTNAPNLLQDPDF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,811
Number of Sequences: 5004
Number of extensions: 60529
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)