Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0886
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061085-1|AAL28633.1|  491|Drosophila melanogaster LD07362p pro...   141   7e-34
AE014297-1514|AAF54806.2|  491|Drosophila melanogaster CG5663-PA...   141   7e-34
AY052119-1|AAK93543.1|  392|Drosophila melanogaster SD07085p pro...    28   8.4  
AF220040-1|AAF23824.1|  392|Drosophila melanogaster cathepsin D ...    28   8.4  
AE013599-512|AAF59186.1|  392|Drosophila melanogaster CG1548-PA ...    28   8.4  

>AY061085-1|AAL28633.1|  491|Drosophila melanogaster LD07362p
           protein.
          Length = 491

 Score =  141 bits (341), Expect = 7e-34
 Identities = 76/157 (48%), Positives = 100/157 (63%), Gaps = 15/157 (9%)
 Frame = +3

Query: 171 ATWSMGPGTLEVPLSLFATNRRRLAN----------KLKSGQIVVL-QGGEDVNHYDTDV 317
           A + MG G   VP++LF  NR R             K   G ++VL +GG+D + Y+TDV
Sbjct: 2   AAFQMGSG-YAVPMTLFRNNRDRAGKAILKELLPGLKFNDGNLLVLLEGGKDQSLYNTDV 60

Query: 318 QYVFRQEAYFTWVCGVREPGCY--FALDVSTG--KSYLFVPRLPEEYEVWMGKLHACSDF 485
            YVFRQE+YF ++ GV+EPGCY    +DV TG  KS LFVPR P+EY  WMG+L    +F
Sbjct: 61  DYVFRQESYFQYLFGVKEPGCYGILTIDVKTGAQKSVLFVPRFPDEYGTWMGELLGLQEF 120

Query: 486 KNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDS 596
           K +Y VDEV+YVDE+   L+   P+ +LTLSG N+DS
Sbjct: 121 KAMYEVDEVFYVDEMSVYLEGASPKLILTLSGTNSDS 157


>AE014297-1514|AAF54806.2|  491|Drosophila melanogaster CG5663-PA
           protein.
          Length = 491

 Score =  141 bits (341), Expect = 7e-34
 Identities = 76/157 (48%), Positives = 100/157 (63%), Gaps = 15/157 (9%)
 Frame = +3

Query: 171 ATWSMGPGTLEVPLSLFATNRRRLAN----------KLKSGQIVVL-QGGEDVNHYDTDV 317
           A + MG G   VP++LF  NR R             K   G ++VL +GG+D + Y+TDV
Sbjct: 2   AAFQMGSG-YAVPMTLFRNNRDRAGKAILKELLPGLKFNDGNLLVLLEGGKDQSLYNTDV 60

Query: 318 QYVFRQEAYFTWVCGVREPGCY--FALDVSTG--KSYLFVPRLPEEYEVWMGKLHACSDF 485
            YVFRQE+YF ++ GV+EPGCY    +DV TG  KS LFVPR P+EY  WMG+L    +F
Sbjct: 61  DYVFRQESYFQYLFGVKEPGCYGILTIDVKTGAQKSVLFVPRFPDEYGTWMGELLGLQEF 120

Query: 486 KNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDS 596
           K +Y VDEV+YVDE+   L+   P+ +LTLSG N+DS
Sbjct: 121 KAMYEVDEVFYVDEMSVYLEGASPKLILTLSGTNSDS 157


>AY052119-1|AAK93543.1|  392|Drosophila melanogaster SD07085p
           protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 189 PGTLEVPLSLFATNRRRLAN-KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGV 365
           PG L VPL  F + RR  A+   +  Q+ +  GG DV    ++       +A +     +
Sbjct: 25  PGLLRVPLHKFQSARRHFADVGTELQQLRIRYGGGDVPEPLSNY-----MDAQYYGPIAI 79

Query: 366 REPGCYFALDVSTGKSYLFVP 428
             P   F +   TG S L+VP
Sbjct: 80  GSPPQNFRVVFDTGSSNLWVP 100


>AF220040-1|AAF23824.1|  392|Drosophila melanogaster cathepsin D
           precursor protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 189 PGTLEVPLSLFATNRRRLAN-KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGV 365
           PG L VPL  F + RR  A+   +  Q+ +  GG DV    ++       +A +     +
Sbjct: 25  PGLLRVPLHKFQSARRHFADVGTELQQLRIRYGGGDVPEPLSNY-----MDAQYYGPIAI 79

Query: 366 REPGCYFALDVSTGKSYLFVP 428
             P   F +   TG S L+VP
Sbjct: 80  GSPPQNFRVVFDTGSSNLWVP 100


>AE013599-512|AAF59186.1|  392|Drosophila melanogaster CG1548-PA
           protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 189 PGTLEVPLSLFATNRRRLAN-KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGV 365
           PG L VPL  F + RR  A+   +  Q+ +  GG DV    ++       +A +     +
Sbjct: 25  PGLLRVPLHKFQSARRHFADVGTELQQLRIRYGGGDVPEPLSNY-----MDAQYYGPIAI 79

Query: 366 REPGCYFALDVSTGKSYLFVP 428
             P   F +   TG S L+VP
Sbjct: 80  GSPPQNFRVVFDTGSSNLWVP 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,983,820
Number of Sequences: 53049
Number of extensions: 645929
Number of successful extensions: 1328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)