Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0886
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...   112   2e-25
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    30   1.1  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   2.5  
AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical ...    29   3.3  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    28   5.8  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    28   5.8  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score =  112 bits (269), Expect = 2e-25
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
 Frame = +3

Query: 174 TWSMGPGTLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQE 338
           T+ +   T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQE 61

Query: 339 AYFTWVCGVREPGCYFALDV-STGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVY 515
           +YF W  GV E   Y A+DV S GK+ LF PRL   Y +W GK++    FK  YAVDEV 
Sbjct: 62  SYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDEVV 121

Query: 516 YVDE---IKDVLKSLMPETLLTLSGPNTDS 596
           + D+   I + LK L  + +  L   NTDS
Sbjct: 122 FNDKTTTIAEKLKELSAKHVYLLRAENTDS 151


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 74  SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 244
           ++L P  S ITY YF +P++ K+    II H   ++  P     S S V +  + PT  S
Sbjct: 275 AILMPALSPITYLYFVRPYRQKV--KRIIRHPFKLLSRPHERATSNSGVFYSGDHPTHFS 332

Query: 245 K 247
           K
Sbjct: 333 K 333


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 74  SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 244
           S+L P  S ITY YF +P++ K+    II +   ++  P     S S V + R+ P   S
Sbjct: 275 SILMPALSPITYLYFVRPYRRKV--KSIIRNPFKILSRPHERATSNSGVFYSRDHPIHFS 332

Query: 245 K 247
           K
Sbjct: 333 K 333


>AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical
           protein Y54E2A.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 581 ARQCQQCFRHQTFEYIFYLINIIDFINC--IYVFEVTTGM 468
           +R+  +  RHQT +   Y++N   F++C  +Y F +  G+
Sbjct: 124 SREANEQSRHQTIQIDIYIVNHQIFLDCQPMYSFSIMEGL 163


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 578 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEV 480
           R+C   +    F++IF+  NI      +++FE+
Sbjct: 38  RRCFSAYFLNFFQFIFFFFNIFQLFYVVFLFEI 70


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 545 FEYIFYLINIIDFINCIYVFEVTTGMKFAHPDFI 444
           F  IFY I I D ++CI +F +T      H D +
Sbjct: 60  FYRIFYYIGIADVLHCICLFWMTFQKYVIHGDIL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,272
Number of Sequences: 27780
Number of extensions: 344966
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)