Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0883
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 94 1e-20
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 54 2e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 28 1.0
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 27 2.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 26 5.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.4
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 7.2
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.5
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 94.3 bits (224), Expect = 1e-20
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Frame = +1
Query: 64 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 243
+ VG LP L+E+ P V E + K ++ VPGAFTP CS + +PGY+ N +
Sbjct: 2 VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57
Query: 244 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLSDPSGNFIKALDLGTNLPP-LGG 414
+ G++ I V+VND +V AW + + V ++D +G F KA D G + LG
Sbjct: 58 AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117
Query: 415 FRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 519
RSKR++ V+ + KV + +E + T + S ADK+
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = +1
Query: 64 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 243
I+VGD +P L D + + ++TA K +V+FA P A TPGC+K G+ N K+
Sbjct: 46 IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103
Query: 244 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLSDPSGNFIKAL 381
++ E++ +S + A+ + N +LSDP G IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 118 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 288
NK + EL KV++ + C K P Y AD+L+ DG++ E+ C D
Sbjct: 28 NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 270 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 181
H+ S+RF+ + LY VC TS +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 217 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLSDPS 360
GY+ +++ L +G + + V++P A W +H N + + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 258 NSIRFQFICVLYVSRQVCFRTSRG 187
NSI+ F+C++Y+S+ + ++ G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 377 ALMKLPLGSDSIRTFPLVLC*APQAAITYGSLTDTHTISATPSDFSLSAFCTY 219
A+ +LP D PL+ +P A + Y +L + A D SL FC++
Sbjct: 243 AMQELPFSLDYRPFSPLLAWSSPLANVEYLALVYPGHLFAFRYDKSLGKFCSF 295
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 636 KLRKVRASLKVTNAGKIALISFLCYLILQCDITHCLLHF 520
KL ASL KI +S++C+ L I HC +F
Sbjct: 127 KLSSAMASLHYLKFVKIIALSYICFSSL-IRICHCWTYF 164
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 473 WSPMALACLVLSPIRSK*SRQC 538
WSP+A CL+ + RS R C
Sbjct: 153 WSPIASHCLIATAYRSSSIRLC 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,128
Number of Sequences: 5004
Number of extensions: 59206
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -