Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0881
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    88   1e-18
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    78   9e-16
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    48   8e-07
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    43   4e-05
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    41   1e-04
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    33   0.045
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.0  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
 Frame = +3

Query: 147 KNLTLDEVKKHKDEKSVWIIHND-VYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 323
           K +T++EV KH     ++I+  D VYD++KFL+ HPGG + L+++AG+D +  FEDVGHS
Sbjct: 4   KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHS 63

Query: 324 DDARELLKKYKIGTL 368
           +DA+ELL+K+ IG L
Sbjct: 64  EDAQELLEKFYIGNL 78


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 78.2 bits (184), Expect = 9e-16
 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
 Frame = +3

Query: 162 DEVKKHKDEKSVW-IIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARE 338
           +E+ +H + K ++ +I+  VYDV+ F ++HPGG D +L+ AG+D T+A++D+GHS  A E
Sbjct: 9   EEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADE 68

Query: 339 LLKKYKIGTLPPG--ERCK 389
           LL++  IG L PG  ER K
Sbjct: 69  LLEEMYIGDLKPGTEERLK 87


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 153 LTLDEVKKHKDEKSVWI-IHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDD 329
           +T +E+ KHK ++  WI I   VY+V+ +L  HP G   +L+ AG+D T  F       +
Sbjct: 74  VTKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVN 133

Query: 330 ARELLKKYKIGTL 368
              LLK   +G L
Sbjct: 134 EEALLKTSFVGFL 146


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = +3

Query: 150 NLTLDEVKKHKDEKSVWI-IHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSD 326
           ++T +E+ KH      W+ I   VY+VT +L  HP G   +L+ +G D T+ +  + H D
Sbjct: 71  SVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY--LKHHD 128

Query: 327 --DARELLKKYKIGTL 368
             +  ELLK   +G L
Sbjct: 129 WVNEEELLKTSFVGYL 144


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 201 IIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFED--VGHSDDARELLKKYKIGTLPP 374
           +I+  V+D+T F  EHPGG   L    GKD T AF      H++ A  LL  Y++  +  
Sbjct: 377 LINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLSTYRVAVVRG 434

Query: 375 GERCKI 392
           G   ++
Sbjct: 435 GMEVEV 440


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = -3

Query: 454 PMSKAPASATTAHFNFEQSVMILHLSPGGNVPILYFFNNSRASSLCPTSSKAWVPSFPAT 275
           P+  +P  ++  H  F  + +  H +P G VP  +   N +   + P+ S  +   FP+T
Sbjct: 313 PIPFSPNVSSHPHMAFLPATVPTHSAPPGFVPYDFPITNDK---MYPSPS--FQEEFPST 367

Query: 274 SNNESAPPGCSSKNLV 227
           S + SA PG S+  +V
Sbjct: 368 SKSPSATPGSSNAPVV 383


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 231 KFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGERCKIITDCSK 410
           +FL++     +   E    D  +  + +    D  E L+ +K GTL  G    I    SK
Sbjct: 70  EFLDQQANKVEEFFENLVSDARERMDLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSK 129

Query: 411 LK 416
           L+
Sbjct: 130 LR 131


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 400  SVMILHLSPGGNVPILYFFNNSRASSL--CPTSSKAWVPSFPA 278
            S  +LHL     +P++YF N    + L   P+S+  W   F A
Sbjct: 2219 SSKVLHLPSNELIPMMYFSNPQEIALLLSLPSSNNHWTSPFLA 2261


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 388 LHLSPGGNVPILYFFNNSRASSLCPTSSKAWVPSFPATSNNESAPPGCSSKNLVTS 221
           L  S   + P +   ++S  SS  PTS+ +   S  +  ++ S+P   SS  L +S
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS 233


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 IHNDVYDVTKFLEEHPGGADSLLEVAGKDG 293
           ++N+VYD+       PG + +LL  AG DG
Sbjct: 89  VNNNVYDIPLQPPVKPGESRTLLIQAGLDG 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,763
Number of Sequences: 5004
Number of extensions: 48451
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)