Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0880
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456...    29   4.5  
04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   4.5  
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133...    28   6.0  
09_02_0366 + 7941550-7942161,7942230-7942775                           28   7.9  

>05_01_0529 -
           4561792-4561854,4561954-4562016,4562413-4562471,
           4562887-4563988
          Length = 428

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 321 HSKTYLTQKLPGNETSIICEIHLKFIFLEYFTRIHYIL 208
           HSK  ++ ++   E   IC I  K  F +Y  R H  L
Sbjct: 346 HSKILMSYEMESREVCFICGIGGKAYFSQYLLRFHITL 383


>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 324 IHSKTYLTQKLPGNETSIICEIHLKFIFL 238
           +H KT+L +  PG E S  C ++L+F  L
Sbjct: 1   MHLKTHLIRSNPGWEDSTYCHVYLEFSVL 29


>12_02_0659 -
           21612325-21612328,21613164-21613199,21613279-21613394,
           21613983-21614567
          Length = 246

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 446 YIL*KYHLLNIEYNIIEKLCRDIRLHGTLCRYITTILWINEYTAKHI 306
           Y L  + LL    N IE   R  +  GT+   +TT L I EY +K +
Sbjct: 172 YELGYWFLLKYLRNFIEHAHRYTKDQGTVLDIVTTALMIGEYLSKFV 218


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 154 TKYAFYVCNKTFNLLSRIQLYVY 86
           T+++  VCNKTFN  + +Q++++
Sbjct: 186 TQFSCAVCNKTFNRFNNMQMHMW 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,832
Number of Sequences: 37544
Number of extensions: 244737
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)