Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0880
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 563 CKPKLFKYLNTMTMKFSITITVLL 492
           C+P  F Y    TM FS+T++VL+
Sbjct: 86  CQPFFFSYYLATTMHFSVTVSVLV 109


>AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical
           protein Y53G8B.3 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 671 IDISRIGYFYRVSKFLLVYAKKFLPG 594
           I + R G+ YR+ K+L +Y +  LPG
Sbjct: 252 ISMRRRGFLYRIRKYLKLYYQFLLPG 277


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 154 TKYAFYVCNKTFNLLSRIQLYV 89
           T+YA   CNKTF  LS ++++V
Sbjct: 506 TRYACKDCNKTFGQLSNLKVHV 527


>AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.4 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 107 SNSALCICRVSDTTPNNKYTNALLNNVFPTTTLVS 3
           SNS L ICR +  +P+ K      N++F +  + S
Sbjct: 38  SNSLLIICRTAALSPSLKLAKNFWNSIFSSPAVTS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,079
Number of Sequences: 27780
Number of extensions: 276972
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)