Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0879
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 46 6e-06
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 4.9
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 26 4.9
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 26 4.9
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 6.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.6
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 8.6
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 8.6
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 25 8.6
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 46.0 bits (104), Expect = 6e-06
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 326 ECPECKAIITKKWGCDWVKCSACKTEICWVTRGRRWGQAG 445
ECP+C I K GC+ + C CK E CWV G W + G
Sbjct: 290 ECPKCSTTIEKNGGCNHMTCKKCKYEFCWVCLG-PWTEHG 328
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 111 QSLVRQWNEFRVPFSAAAKPRANHFS*SSEDT 16
+S VR W + PF+ A + N F+ SE T
Sbjct: 89 KSAVRSWTQQSTPFTCIALNKKNQFATGSELT 120
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 480 TPQRQPPLVSPRPAWPHRRPRVTQHISVLHAEHLTQSHPHFF 355
TP +V P P P V ++ L +E + Q+ P F+
Sbjct: 153 TPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFY 194
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 301 FNKERRSFGMSGMQGYYYEEMGMRLGQVFSMQNR 402
+++ RRS GM + YYY Q S +NR
Sbjct: 135 YSRSRRSAGMGSWEEYYYNSYDYMNDQNASNKNR 168
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 229 SMLFACLAFMNTLTGYAVDF 170
++LFACLAF+N AV F
Sbjct: 389 TVLFACLAFLNASASAAVVF 408
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 236 LESISNANPDHTDDSTRALLLNLI 307
L+++ + NP+H+ TR L +NLI
Sbjct: 564 LDALKDDNPEHSHLQTRLLEINLI 587
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 218 EQHRVKLESISNANPDHTDDSTRALLLNLIKKGEALECPECKAI 349
E+H + S S+ P HT+ T A ++ L +K EA E P A+
Sbjct: 1727 EKHNLISRSPSSPPPIHTNFDTNADIITLFEK-EANEHPSSIAL 1769
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 733 VEVKNWVLTSTRPRVLQRK---HRHEGRQIELHNNSGFNTSHRYP 608
+E K S + R L+R H R+ L+N+S FN+SH+ P
Sbjct: 22 LEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQVP 66
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 329 CPECKAIITKKWGCDWVKCSACKTEICWV 415
CP C ++ + GC + C C T C++
Sbjct: 368 CPTCDRVVERIDGCCHMNC-LCGTHFCFL 395
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 119 IPCSLLYDSGMSSACHSLPRLNREPTTFHNLPRI 18
+ C++ D + HSL ++NR P N I
Sbjct: 83 LKCNITKDKDVEGCVHSLKKMNRTPFALINAAAI 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,156
Number of Sequences: 5004
Number of extensions: 65581
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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