Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0879
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 122 ALCEPGVRHFPCPVCKKINCV 184
           AL  PGV   P   CK + C+
Sbjct: 303 ALLTPGVTMIPACTCKAVACL 323


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 435 PHRRPRVTQHISVLHAEHLTQSHPH 361
           PH +P+  QH S    +HL     H
Sbjct: 177 PHMQPQQGQHQSQAQQQHLQAHEQH 201


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 329 CPECKAIITKKWGCDWVKCSACKTEIC 409
           C +CK  I     C  V+C+    E+C
Sbjct: 43  CHKCKYGIAMSSACGIVQCAKGPDELC 69


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 332 PECKAIITKKWGCDWVKCSACKTEICWVTRGRRW 433
           P   AI+T+     W+   A     C++TRG  W
Sbjct: 355 PWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 388


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 350 ITKKW-GCDWVKCSACKTEICWVTRGRRW 433
           + K W  CD + C+A    +C +   R W
Sbjct: 108 LCKLWLTCDVLCCTASILNLCAIALDRYW 136


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 350 ITKKW-GCDWVKCSACKTEICWVTRGRRW 433
           + K W  CD + C+A    +C +   R W
Sbjct: 108 LCKLWLTCDVLCCTASILNLCAIALDRYW 136


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 501 HHVDIVIKC*S*QSVRLLILLGCMVCCLGS 590
           HH D  +   S + + +++L G +VC L +
Sbjct: 539 HHRDTPVVRASGRELTIILLAGVLVCYLNT 568


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 350 ITKKW-GCDWVKCSACKTEICWVTRGRRW 433
           + K W  CD + C+A    +C +   R W
Sbjct: 108 LCKLWLTCDVLCCTASILNLCAIALDRYW 136


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 501 HHVDIVIKC*S*QSVRLLILLGCMVCCLGS 590
           HH D  +   S + + +++L G +VC L +
Sbjct: 629 HHRDTPVVRASGRELTIILLAGVLVCYLNT 658


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,916
Number of Sequences: 438
Number of extensions: 4568
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)