Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0878
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.4  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    25   7.3  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 240 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 368
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 608 YFMVDNIIYSYVIVGNLSIRICLKRIGDFSYLI-FFFEQHLQKFPIAAL 465
           + + DN  Y + +   L     LK +G FSYLI ++F   + K  + +L
Sbjct: 317 FILADNRHYLFYVFNRLFRIWWLKYLGPFSYLILYYFFLDISKLQMTSL 365


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 RSKLMVIPTLIKWKGVQRLEGSQCSNRELLQMLFEEED 512
           R+K+  + T + WK V++    Q +N    + LFEE D
Sbjct: 75  RAKVNRLKTYLSWKEVRKKAKEQDANPADTKDLFEEVD 112


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 273 VEAEPVVRHYLSELDK-SIIFVYVDVGDREYW 365
           V+  P  RH L+E+DK S +   V  G  +YW
Sbjct: 121 VQVSPEARHKLAEIDKGSHLEANVSGGLLKYW 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,601
Number of Sequences: 5004
Number of extensions: 55272
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)