Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0877
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.5  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   3.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.8  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   5.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.8  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   7.6  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 508 RENTFICLELETKTLIFVNLFKKKNRFASNL 600
           R   F+CL  E + L+ +N F   +RF S L
Sbjct: 617 RYGLFLCLHHEQRILLDMNSFSDAHRFVSKL 647


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 4   IPGLQVDFAEERSAVRVHHLRFEESSRPRYPAAHLHVHGI 123
           +P  + D+    + V +H L++  +++ +YP   L + G+
Sbjct: 77  MPSTEEDYYFNATRVLIHRLKYHPTTKSKYPIHILALRGV 116


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 233 FSREKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 331
           FS E L+KKN FLI   +    F   N+ +ST+
Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 152 TPQHINNP--NYIFLHYNMQ*NFIHKQSFFSREKLTKKNNFLIFSTK 286
           +P H +NP  N    H +     + +   FSRE   KK N  +FS++
Sbjct: 73  SPHHASNPHPNSRQKHQHQTSKSVPRSQRFSRELNVKKENKKVFSSQ 119


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 294  CFFRMATLDYPRLVQVKHLEILSKS 368
            CFFR+    Y RL ++K+LE ++ S
Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 227 SFFSREKLTKKNNFLIFSTKIIVFFSYG 310
           SFF++  LTK+   ++    +  FF++G
Sbjct: 3   SFFTKNTLTKRKLIMLALAIVFTFFAFG 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,560
Number of Sequences: 5004
Number of extensions: 43117
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)