Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0877
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     29   4.0  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    29   4.0  

>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +2

Query: 212 FIHKQSFFSREKLTKKNNFLIFSTKIIVFFSYGNIRLSTTR-------SSQALRDP 358
           F        +E+  K  NF IF+ K +V  S  N   STTR       SSQ  RDP
Sbjct: 63  FNRMNKILRKEEKQKSQNFQIFNEKDLVTNSNANPYFSTTRKPKNRSDSSQKARDP 118


>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 167 NNPNYI-FLHYNMQ*NFIHKQSFFSREKLTKKNNFLIFST 283
           N PN + FLH+ +  NF  K  +FS   L     FLI++T
Sbjct: 236 NIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFFFLIWNT 275


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 647 VLIHLTRMTQVNRLSIRLDANLFFFLNKFTNINVLVSSSKQIKV 516
           V  H+T     N + + LDA+L+ F++ F  + +L+SS +   V
Sbjct: 235 VTYHVTAPLVTNSVLLFLDASLWAFMHAFEGLLILLSSQEMRSV 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,857
Number of Sequences: 27780
Number of extensions: 239078
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)