Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0877
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.2  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   8.2  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 56  IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 196
           I+C + S     + +  F  +GF       P+    ++ P   FL Y
Sbjct: 317 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 117 MNMKVRSRVARSGRLFKTQ 61
           ++MK++  V +SGR+  TQ
Sbjct: 353 VSMKIKQNVPQSGRVNNTQ 371


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/47 (23%), Positives = 18/47 (38%)
 Frame = +2

Query: 56  IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 196
           I+C + S     + +  F  +GF       P+     + P   FL Y
Sbjct: 370 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 257 KNNFLIFSTKIIVFFSYGNIRLSTTR 334
           +N  L+   KI++   YG+I  S T+
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQ 36


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 635 LTRMTQVNRLSIRLDANLF 579
           L   T VN L I +DAN+F
Sbjct: 59  LLAQTLVNILQILIDANVF 77


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 635 LTRMTQVNRLSIRLDANLF 579
           L   T VN L I +DAN+F
Sbjct: 59  LLAQTLVNILQILIDANVF 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,074
Number of Sequences: 438
Number of extensions: 2950
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)