Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0873
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    29   0.57 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   0.99 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.0  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.0  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   9.2  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   9.2  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 347 EDGMSLTLPIIAIEYINYITSKQGTLSDTSPHKIITFVNTTDSTATSPDMQFHHVVFPP 523
           +   SLT P  A E+   +T KQ T+   +P K +  +    S+  S  M  H +   P
Sbjct: 222 QSDFSLTSPSSAKEFKQLLTLKQSTIIPRTPQKTVRSIVKQTSSPHSSKMPKHSLPSSP 280


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 398  YITSKQGTLSDTSPHKIITFV-NTTDSTATSPDMQFHHVVFPPNVHLLLDMFEKHGLKEN 574
            Y+ +    L DTS HK+   + N  + +A   ++       PP    LLD    H  +  
Sbjct: 1148 YLRNLPTNLLDTSMHKLFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRII 1207

Query: 575  IVQQFRELNKDNIIILIAATL 637
              ++  ++N  N+ I+ + TL
Sbjct: 1208 AFEKVNKMNIRNVCIVFSPTL 1228


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 401 ITSKQGTLSDTSPHK-IITFVNTTDSTATSPDMQFHHVVFPPNVHLLLDMFEK 556
           I   +G +++++P K ++TF+N  +ST +  + +  +V F  N    ++ FEK
Sbjct: 459 IAQLRGLVNESAPGKHVLTFLNKLESTFSFVESRRMNVDFTLNDTSQVEAFEK 511


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +2

Query: 509 VVFPP--NVHLLLDMFEKH-GLKENIVQQFRELNKDNIIILIAATLL 640
           ++FP   + + LL  F  H   +E+ +QQ ++LN+ ++I  +AA ++
Sbjct: 514 IIFPEKYDFNRLLATFAMHFSSEEDEIQQTKKLNRASVISKVAALII 560


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 207 EFIDPPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNI 91
           E IDP DT+++F    + +  +  ++   ++L  +SNN+
Sbjct: 230 EEIDPKDTLHTFLQIYIFATMANEMDCMSSLLDAYSNNV 268


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 512 VFPPNVHLLLDMFEKHGL-KENIVQQFRELNKDNIIILIAATLL 640
           +FPP++  +L +F  HG+ KE++   +R     NI   IA   L
Sbjct: 209 MFPPSLSRILSLFSFHGVRKESLELLWRASKYPNIQGAIALLCL 252


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 518 PPNVHLLLDMFEKHGLKENIVQQ 586
           P N+H+L+DM ++ GL    VQ+
Sbjct: 185 PENIHVLVDMTQQVGLSSIDVQE 207


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  ISTARAFLSPITN-RKNLHVIKNTLATKIL-FEKNTNIVSGISIHRDGK 151
           IS  + FL+   N    L+ I  +    ++ FE +TN V+ I+ H DGK
Sbjct: 48  ISPDKKFLAAAGNPHVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGK 96


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 258 FFKSLFGPIPDNIKSCG 208
           FF+SLFG      KSCG
Sbjct: 47  FFRSLFGSSSSGSKSCG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,391
Number of Sequences: 5004
Number of extensions: 57082
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)