Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0873
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 59 3e-09
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 58 4e-09
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 58 4e-09
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 56 2e-08
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 56 3e-08
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 55 4e-08
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 54 1e-07
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 31 0.58
12_02_1100 + 26077776-26077893,26078208-26078434 30 1.8
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 5.4
07_03_1469 - 26742772-26743848 27 9.5
06_03_0681 - 23480161-23480775 27 9.5
01_06_0749 - 31655348-31657339 27 9.5
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 170 KKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQDHIYIPIVFKAPA 346
+ E+I+S G++ SPQLLMLSG+GP L+ GI +V D P VG+ + D+ I +P+
Sbjct: 266 RNEIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHPGVGQGMSDNPMNAIYVPSPS 325
Query: 347 EDGMSLTLPIIAIEYINYITSKQGT 421
+SL + + +YI G+
Sbjct: 326 PVELSLIQVVGITRFGSYIEGASGS 350
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +2
Query: 170 KKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQDHIYIPIVFKAPA 346
K E+IVS G++ SPQLLMLSG+GP++ L+ GI+V+ D P VG+ + D+ + +P
Sbjct: 277 KNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADNPMNSVFIPSPV 336
Query: 347 EDGMSL 364
+SL
Sbjct: 337 PVELSL 342
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/47 (59%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = +2
Query: 176 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQDH 313
E+I+S GS+ SPQLL+LSGIGP +DL +LGI V AD+P VG+++ D+
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDN 347
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 176 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQDHIYIPIVFKAPAED 352
E+I+S G++ SPQLLMLSG+GP L++ GI +V + P VG+ + D+ I +P+
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDNPMNAIYVPSPSPV 334
Query: 353 GMSLTLPIIAIEYINYITSKQG 418
+SL + E +YI G
Sbjct: 335 EVSLIQVVGITEVGSYIEGASG 356
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 170 KKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQDHIYIPIVFKAPA 346
K E+IV+ G++ SPQLLMLSG+GP+ +L+ GI V D P VG+ + D+ + +P
Sbjct: 272 KSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADNPMNSVFVPSPV 331
Query: 347 EDGMSLTLPIIAIEYINYITSKQGT 421
+SL + + +I G+
Sbjct: 332 PVALSLVQIVGVSRFGTFIEGVSGS 356
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Frame = +2
Query: 47 NRKNLHVIKNTLATKILFEKNTNIVSGISIHRDGKD---------ITVNIKKELIVSGGS 199
N NL V+ + T+I+F +I + KD +T N E+I+S G+
Sbjct: 240 NHNNLRVLLHASVTRIIFNTEQEHRKPRTIGVEFKDENGGQQHAFLTRNRDSEIIISAGA 299
Query: 200 INSPQLLMLSGIGPKSDLKNLGIDVV-ADLPVGENLQDH----IYIP 325
I SPQLL+LSGIGP+ +LK I VV + VG+ + D+ I+IP
Sbjct: 300 IGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGKGMSDNPMNSIFIP 346
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = +2
Query: 164 NIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVA-DLPVGENLQDH----IYIPI 328
N E+IVS G+I SPQLL+LSGIGPK+DL++ I VV + VG+ + D+ I+IP
Sbjct: 274 NCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADNPMNSIFIPT 333
Query: 329 VFKAPAEDGMSLTLPI 376
K+P + T+ I
Sbjct: 334 --KSPPRQSLIETVGI 347
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 288 GKSATTSIPK---FFKSLFGPIPDNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEI 127
G T+S+PK FF +L GP D +KS E + P D F + +S +C+ +
Sbjct: 214 GSHHTSSLPKVDRFFAALEGPELDQLKSEEELVLPSDKTWPFLLRFPVSAFGMCLGV 270
>12_02_1100 + 26077776-26077893,26078208-26078434
Length = 114
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 189 DTINSFFMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCKFFLFVIGLK 31
D NS F+FT +C+ + + LV + N AS FL C L +GL+
Sbjct: 28 DANNSSFVFTPWLCMHVCLLVTVLRLVIPAGNCQAASSFLSRCVLVLPSLGLQ 80
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 267 IPKFFKSLFGPIPDNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEI 127
+ +FF +L GP D ++S E + P D F + +S +C+ +
Sbjct: 230 VDRFFAALEGPELDKLRSSEELVLPSDKTWPFLLRFPVSAFGICLGV 276
>07_03_1469 - 26742772-26743848
Length = 358
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 191 GGSINSPQLLMLSGIGPKSDLKNLGIDVVADLPVGENLQDH 313
GG +P L L G+ P +L+ A LPVG + +DH
Sbjct: 230 GGEERTPSELALDGVAPVVNLRRSDFSWKAFLPVGAD-RDH 269
>06_03_0681 - 23480161-23480775
Length = 204
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 345 AGALKTIGMYI*SCKFSPTGKSATTSIPKFFKSLFGPIP 229
AG L+ +G + FSP G P F +FGP+P
Sbjct: 166 AGWLQHVGDHF----FSPVGAPGALGSPSAFLDIFGPLP 200
>01_06_0749 - 31655348-31657339
Length = 663
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 530 HLLLDMFEKHGLKENIVQQFRELNKDNII 616
++LLDM+ K G E ++ F+E+ NII
Sbjct: 511 NMLLDMYAKCGRIEECLKAFKEMEDRNII 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,618
Number of Sequences: 37544
Number of extensions: 322544
Number of successful extensions: 923
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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