Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0868
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   2.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   3.6  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    26   4.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   6.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   6.3  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   6.3  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.4  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 268 RLLQEGVDPKELDNMTKQFGFPVGAATLADEVGI 369
           R L   ++P E  N T  +G P   A L D+V +
Sbjct: 711 RFLLSRLNPSETHNTTSMYGAPPAHAILTDDVSL 744


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 485 DLRPMYPACTKSCMIPKFPPLMRSPKALARSTAM*EPTSI 366
           DL P +PA  K    PK P   ++PK   R+  +  P S+
Sbjct: 78  DLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQIVTPKSL 117


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
 Frame = -1

Query: 662 SSNDNTASFTNLETIRSCWSSTVLAPRGSNAYLSFRILIAPWFTSLFLEPFS-------- 507
           +S+  T+S   L T  SC +ST + P G N+       + P  +S  L   +        
Sbjct: 376 TSSTGTSSSPLLSTSTSCTTSTSIPPTG-NSTTPVTPTVPPTSSSTPLTTTNCTTSTSVP 434

Query: 506 YT*KPLPDLRPMYPACTKSCMIP-KFPPLMRSPKALARSTAM*EPTSIP-TSSANVAAPT 333
           YT  P+         CT S  +P    P+  +P      T     TSIP TS+   + P 
Sbjct: 435 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTT---STSIPYTSTPVTSTPL 491

Query: 332 GKPNC 318
              NC
Sbjct: 492 TTTNC 496



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = -1

Query: 662 SSNDNTASFTNLETIRSCWSSTVLAPRGSNAYLSFRI--LIAPWFTSLFLEPFSYT*KPL 489
           +S   ++S     T  SC +ST + P G ++ LS  I   + P  TS    P   T    
Sbjct: 98  ASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 157

Query: 488 PDLRP-MYPACTKSCMIPKFPPLMRSPKALARSTAM*EPTSIPTSSANVAAP 336
            D      P  + SC      P      +L  ST +  PT  PTS+++ + P
Sbjct: 158 TDTNSNPLPTTSTSCTTSTSIPPTGGSSSL--STPI-TPTVPPTSTSSTSIP 206



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
 Frame = -1

Query: 662 SSNDNTASFTNLETIRSCWSSTVLAPRGSNAYLSFRI--LIAPWFTSLFLEPFSYT*KPL 489
           +S+ +T S     T  SC +ST + P G ++ LS  I   + P  TS    P   T    
Sbjct: 155 TSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 214

Query: 488 PDLRPM-YPACTKSCMIPKFPPLMRSPKALARSTAM*EPTSIPTSSANVAAP 336
            D      P  + SC      P   S       T    PTS  TSS ++  P
Sbjct: 215 TDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTS--TSSTSIPIP 264


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 176 PTATAAADVSSLVPGCLIISSNCILST 96
           P+ATA ADVSS +     +SSN I ST
Sbjct: 141 PSATALADVSSSLNYSRKLSSNSIKST 167


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +2

Query: 215 GLVFTP-----HVSFLLCLVKQ*DCYKRVLILKN 301
           G++FTP     H SF + L K+ D Y  ++++KN
Sbjct: 87  GILFTPFEKGGHTSFNVALRKELDIYASLVLIKN 120


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 215 PSPTVMTTFPCRRPTATAAADVSSLV 138
           PSP V +TF    PT T +A   S++
Sbjct: 482 PSPAVSSTFSFNAPTTTPSATSFSII 507


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 102 QDAIARNY*APRHQRRYIGSRCGRRSTTR 188
           ++ + R   AP+H RR +G+R   RS+ R
Sbjct: 481 REEVLREVFAPKHARRRLGTRFHSRSSHR 509


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 QGKVVITVGDGPGFYTTRILST 249
           QGK ++T+  G  FY ++++ T
Sbjct: 471 QGKDILTLAQGASFYNSKVMRT 492


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 709 PKTAPTSPSRGCVEFFLPMITLLHLQIWKPF 617
           P + P+  S G ++ F  ++++     WKPF
Sbjct: 607 PLSEPSLGSTGVIKLFPALLSISPADTWKPF 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,274
Number of Sequences: 5004
Number of extensions: 71228
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)